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Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_005435 and TX73_005440 are separated by 524 nucleotides
TX73_005440 and TX73_005445 are separated by 85 nucleotides
TX73_005445 and TX73_005450 are separated by 7 nucleotides
TX73_005450 and TX73_005455 overlap by 8 nucleotides
TX73_005435: TX73_005435 - hypothetical protein, at 1,166,218 to 1,166,787
_005435
TX73_005440: TX73_005440 - helix-turn-helix transcriptional regulator, at 1,167,312 to 1,168,334
_005440
TX73_005445: TX73_005445 - TonB-dependent receptor, at 1,168,420 to 1,170,636
_005445
TX73_005450: TX73_005450 - hypothetical protein, at 1,170,644 to 1,171,087
_005450
TX73_005455: TX73_005455 - class I SAM-dependent methyltransferase, at 1,171,080 to 1,171,934
_005455
Group
Condition
TX73
_005435
TX73
_005440
TX73
_005445
TX73
_005450
TX73
_005455
survival
starvation expt 3; 14 days; outgrowth in CAAc
-1.4
-0.2
-0.1
-0.0
+0.1
survival
starvation expt 1; 7 days; outgrowth in CAAc
-1.3
-0.1
+0.1
-0.1
-0.0
survival
starvation expt 4; 7 days; outgrowth in CAAc
-1.2
-0.1
-0.1
-0.0
+0.0
survival outgrowth control
starvation outgrowth control in CAAc
-1.1
-0.1
-0.1
-0.0
-0.1
survival outgrowth control
starvation outgrowth control in CAAc
-1.2
-0.2
-0.1
+0.0
+0.0
sulfur source
NFM with succinate
-1.1
-0.1
-0.1
-0.1
+0.1
survival
starvation expt 1; 14 days; outgrowth in CAAc
-1.4
-0.1
-0.0
+0.2
+0.1
survival
starvation expt 2; 7 days; outgrowth in CAAc
-1.1
-0.2
+0.0
+0.0
-0.1
survival
starvation expt 2; 14 days; outgrowth in CAAc
-1.3
-0.3
+0.0
+0.0
+0.2
carbon source
Sebacic (C); anaerobic
-1.1
-0.1
-0.0
+0.0
-0.1
carbon source
MDC_bicarb with butyrate and Adenine
-0.9
-0.1
+0.0
-0.2
-0.1
carbon source
Fumarate (C); anaerobic
-1.1
-0.3
+0.0
-0.0
+0.1
sulfur source
Thiamine HCl sulfur source
-1.1
-0.1
+0.1
-0.0
-0.1
carbon source
Pimelic (C); anaerobic
-0.9
-0.1
+0.0
-0.1
-0.0
carbon source
Sebacic (C); anaerobic
-1.0
-0.2
-0.1
+0.1
+0.1
survival
starvation expt 2; 3 days; outgrowth in CAAc
-0.9
-0.1
+0.1
-0.2
+0.1
carbon source
Pimelic (C); anaerobic
-0.9
-0.2
-0.0
+0.2
-0.1
survival
starvation expt 4; 3 days; outgrowth in CAAc
-0.9
-0.1
-0.0
+0.1
-0.1
survival
starvation expt 3; 7 days; outgrowth in CAAc
-1.1
-0.2
-0.0
+0.2
+0.0
sulfur source
ethyl methyl sulfide sulfur source
-1.0
+0.0
+0.1
+0.1
-0.2
survival
starvation expt 4; 14 days; outgrowth in CAAc
-0.9
-0.2
+0.0
+0.1
+0.0
sulfur source
NFM_No_Mo_Plus_VCl3 with acetate trihydrate
-0.8
-0.1
+0.1
+0.1
-0.1
sulfur source
2-(Methylthio)ethanol sulfur source
-1.0
-0.1
+0.1
+0.2
-0.1
sulfur source
ethyl methyl sulfide sulfur source
-0.9
-0.1
-0.1
+0.3
+0.0
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.6
+0.0
-0.1
+0.2
-0.3
sulfur source
NFM_No_Mo_Plus_VCl3 with acetate trihydrate
-0.9
-0.1
-0.0
+0.2
+0.0
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.5
-0.2
+0.3
-0.3
-0.0
sulfur source
sodium isethionate sulfur source
-1.0
-0.0
+0.1
+0.2
-0.0
carbon source
Pimelic (C); anaerobic
-0.5
-0.3
-0.1
+0.2
+0.2
sulfur source
NFM with pyruvate
+0.4
-0.0
-0.5
-0.3
+0.2
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