Fitness for 5 genes in Rhodopseudomonas palustris CGA009

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500 ntTX73_005030 and TX73_005035 overlap by 4 nucleotidesTX73_005035 and TX73_005040 are separated by 40 nucleotidesTX73_005040 and TX73_005045 overlap by 11 nucleotidesTX73_005045 and TX73_005050 are separated by 105 nucleotides TX73_005030: TX73_005030 - hydrogenase formation protein HypD, at 1,076,600 to 1,077,742 _005030 TX73_005035: TX73_005035 - hydrogenase expression/formation protein HypE, at 1,077,739 to 1,078,785 _005035 TX73_005040: TX73_005040 - sigma-54 dependent transcriptional regulator, at 1,078,826 to 1,080,274 _005040 TX73_005045: TX73_005045 - ATP-binding protein, at 1,080,264 to 1,081,616 _005045 TX73_005050: TX73_005050 - PAS domain S-box protein, at 1,081,722 to 1,084,109 _005050
Group Condition TX73_005030 TX73_005035 TX73_005040 TX73_005045 TX73_005050
sulfur source NFM_No_Mo with acetate trihydrate +0.0 -0.2 -0.1 -1.2 +0.0
sulfur source NFM_No_Mo_Plus_VCl3 with acetate trihydrate -0.1 -0.1 -0.2 -0.9 +0.0
sulfur source Dimethylsulfoniopropionate sulfur source -0.1 +0.0 -0.1 -0.9 -0.1
stress L-Lactate (C) with 10 mM Sodium Chloride -0.1 +0.3 -1.0 -0.6 +0.4
sulfur source NFM_No_Mo_Plus_VCl3 with acetate trihydrate -0.1 +0.1 -0.1 -0.9 +0.0
sulfur source NFM_No_Mo with acetate trihydrate +0.0 +0.3 -0.2 -1.0 +0.0
stress PM_N2O butyrate and nitrate 0.1 mM -0.1 -0.1 -0.2 -0.5 +0.6
stress L-Lactate (C) with 10 mM Sodium Chloride +0.2 -0.1 -0.3 -0.6 +0.5
sulfur source Sulfoacetic sulfur source +0.1 +0.0 +0.1 -0.6 +0.3
stress L-Lactate (C) with 10 mM Sodium Chloride -0.2 -0.1 -0.3 -0.2 +0.7
stress PM_N2O butyrate and nitrate 0.1 mM -0.0 -0.1 -0.2 -0.4 +0.7
stress PM_N2O butyrate and nitrate 0.1 mM -0.2 -0.0 -0.2 -0.5 +0.8
stress PM_N2O butyrate and nitrate 0.1 mM -0.1 -0.1 -0.2 -0.3 +0.7
carbon source dark aerobic PM with succinate and Sodium Formate aerobic in dark -0.2 -0.1 -0.2 -0.6 +1.1
carbon source acetate trihydrate and Sodium L-Lactate (C) -0.1 +0.4 -0.1 -0.3 +0.3
carbon source dark aerobic PM with succinate and Sodium Formate aerobic in dark -0.1 -0.1 -0.1 -0.5 +1.0
survival starvation expt 4; 7 days; outgrowth in CAAc +0.1 -0.0 +0.2 +0.7 -0.5
survival starvation expt 3; 7 days; outgrowth in CAAc +0.1 -0.0 +0.1 +0.8 -0.4
survival starvation expt 2; 7 days; outgrowth in CAAc +0.1 +0.1 +0.1 +0.6 -0.4
survival starvation expt 1; 7 days; outgrowth in CAAc +0.2 +0.1 +0.1 +0.6 -0.4
survival starvation expt 4; 14 days; outgrowth in CAAc +0.3 +0.1 +0.2 +2.1 -0.7
survival starvation expt 2; 14 days; outgrowth in CAAc +0.0 +0.1 +0.2 +2.7 -0.6
survival starvation expt 3; 14 days; outgrowth in CAAc +0.1 +0.0 +0.2 +3.3 -0.7
carbon source 4-Hydroxybenzoate (C) -0.2 +0.0 +0.3 +2.4 +0.5
carbon source 4-Hydroxybenzoate (C) -0.2 +0.0 +0.1 +2.8 +0.3
survival starvation expt 1; 14 days; outgrowth in CAAc +0.3 +0.2 +0.1 +3.2 -0.5
carbon source 4-Hydroxybenzoate (C) -0.2 -0.1 +0.6 +4.5 +0.6
carbon source aspen wood chips that have been decomposed by a fungus (C) -0.1 -0.0 +0.6 +6.3 +0.1
carbon source aspen wood chips that have been decomposed by a fungus (C) -0.1 +0.0 +0.6 +6.6 +0.0
carbon source aspen wood chips that have been decomposed by a fungus (C) -0.2 +0.2 +0.6 +6.7 +0.1
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TX73_005030
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TX73_005035
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TX73_005045
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TX73_005050
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