Fitness for 5 genes in Rhodopseudomonas palustris CGA009

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500 ntTX73_004520 and TX73_004525 are separated by 103 nucleotidesTX73_004525 and TX73_004530 are separated by 350 nucleotidesTX73_004530 and TX73_004535 are separated by 204 nucleotidesTX73_004535 and TX73_004540 are separated by 111 nucleotides TX73_004520: TX73_004520 - NfeD family protein, at 973,679 to 974,128 _004520 TX73_004525: TX73_004525 - AraC family transcriptional regulator, at 974,232 to 975,092 _004525 TX73_004530: TX73_004530 - KpsF/GutQ family sugar-phosphate isomerase, at 975,443 to 976,456 _004530 TX73_004535: TX73_004535 - outer membrane beta-barrel protein, at 976,661 to 978,376 _004535 TX73_004540: TX73_004540 - Na+-dependent transporter, at 978,488 to 979,504 _004540
Group Condition TX73_004520 TX73_004525 TX73_004530 TX73_004535 TX73_004540
sulfur source NFM with pyruvate -0.1 -0.1 N.D. -0.1 -0.9
carbon source dark aerobic PM with succinate aerobic in dark -0.2 -0.2 N.D. +0.2 -0.2
sulfur source NFM with succinate -0.3 -0.0 N.D. +0.2 -0.2
stress PM_argon75_N2O25 with buyrate and 0.1 mM nitrate; in dark -0.2 -0.2 N.D. -0.1 +0.2
carbon source aspen wood chips that have been decomposed by a fungus (C) -0.0 +0.2 N.D. -0.3 -0.3
sulfur source NFM with pyruvate -0.2 +0.1 N.D. -0.4 +0.1
carbon source PM with succinate anaerobic with light -0.1 -0.3 N.D. +0.3 -0.1
stress L-Lactate (C) with 10 mM Sodium Chloride -0.1 +0.4 N.D. -0.1 -0.2
survival starvation expt 3; 14 days; outgrowth in CAAc +0.2 -0.3 N.D. +0.1 -0.1
carbon source dark aerobic PM with butyrate aerobic in dark -0.3 +0.2 N.D. +0.2 -0.0
carbon source dark aerobic PM with butyrate aerobic in dark -0.4 +0.0 N.D. +0.3 +0.2
carbon source Sebacic (C); anaerobic +0.2 -0.2 N.D. +0.2 -0.2
carbon source acetate trihydrate and Sodium L-Lactate (C) -0.1 +0.1 N.D. -0.3 +0.4
sulfur source sodium isethionate sulfur source +0.1 +0.1 N.D. +0.2 -0.3
carbon source Sebacic (C); anaerobic +0.2 -0.3 N.D. +0.1 +0.2
carbon source acetate trihydrate and Sodium L-Lactate (C) -0.1 +0.5 N.D. -0.2 +0.2
coculture dpurH coculture with Glucose and NaCl and NH4Cl -0.2 -0.1 N.D. +0.8 -0.1
sulfur source Thiamine HCl sulfur source -0.1 +0.3 N.D. +0.3 +0.1
carbon source Azelaic (C); anaerobic +0.4 -0.2 N.D. +0.3 +0.1
coculture dpurH coculture with Glucose and NaCl and NH4Cl -0.1 +0.1 N.D. +0.5 +0.1
carbon source MDC_bicarb with butyrate +0.3 -0.1 N.D. +0.5 -0.0
survival starvation expt 4; 14 days; outgrowth in CAAc +0.3 +0.1 N.D. +0.1 +0.2
monoculture OAcsForEtOH (C); monoculture -0.2 +0.1 N.D. +0.8 -0.1
carbon source MDC_bicarb with butyrate +0.1 -0.2 N.D. +0.9 -0.1
carbon source Pimelic (C); anaerobic +0.3 -0.1 N.D. +0.4 +0.2
carbon source L-Malic (C); anaerobic +0.4 +0.1 N.D. +0.2 +0.1
sulfur source sodium isethionate sulfur source +0.2 +0.3 N.D. +0.3 +0.0
carbon source Pimelic (C); anaerobic +0.2 +0.1 N.D. +0.4 +0.1
monoculture OAcsForEtOH (C); monoculture +0.0 -0.1 N.D. +1.0 -0.0
monoculture OAcsForEtOH (C); monoculture -0.3 -0.0 N.D. +1.2 +0.2
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TX73_004520
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TX73_004525
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