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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_004300 and TX73_004305 are separated by 14 nucleotides
TX73_004305 and TX73_004310 are separated by 71 nucleotides
TX73_004310 and TX73_004315 are separated by 162 nucleotides
TX73_004315 and TX73_004320 overlap by 4 nucleotides
TX73_004300: TX73_004300 - CoxF protein, at 929,898 to 930,065
_004300
TX73_004305: TX73_004305 - cytochrome c oxidase assembly protein, at 930,080 to 930,706
_004305
TX73_004310: TX73_004310 - cytochrome c oxidase subunit 3, at 930,778 to 931,632
_004310
TX73_004315: TX73_004315 - DUF983 domain-containing protein, at 931,795 to 932,190
_004315
TX73_004320: TX73_004320 - SURF1 family protein, at 932,187 to 932,990
_004320
Group
Condition
TX73
_004300
TX73
_004305
TX73
_004310
TX73
_004315
TX73
_004320
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
-3.8
-2.9
-4.4
-0.9
-3.6
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
-1.2
-2.9
-3.3
-0.9
-2.8
carbon source dark aerobic
PM with succinate aerobic in dark
-1.4
-0.9
-0.7
-0.7
-1.1
carbon source dark aerobic
PM with succinate aerobic in dark
-0.5
-1.0
-1.1
-0.5
-1.0
carbon source dark aerobic
PM with succinate aerobic in dark
-0.5
-0.7
-0.9
-0.3
-1.2
carbon source dark aerobic
PM with succinate aerobic in dark
-0.7
-0.9
-0.9
-0.3
-1.1
carbon source dark aerobic
PM with succinate aerobic in dark
-0.8
-0.9
-0.9
-0.4
-0.6
carbon source dark aerobic
PM with succinate aerobic in dark
-0.4
-0.7
-0.5
-0.6
-0.8
carbon source
MDC_bicarb with butyrate and Adenine
-0.2
-0.1
-0.1
-0.3
-0.2
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-0.1
-0.4
+0.1
-0.3
-0.1
sulfur source
Taurine sulfur source
-0.2
-0.2
-0.1
+0.2
-0.2
carbon source
MDC_bicarb with butyrate and Adenine
-0.1
+0.2
+0.0
-0.3
-0.3
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.2
+0.5
+0.1
-0.5
-0.1
sulfur source control
sulfur source control
-0.3
+0.4
-0.0
-0.3
-0.0
carbon source
MDC_bicarb with butyrate and Adenine
-0.0
+0.3
-0.1
-0.4
+0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.6
-0.0
+0.1
+0.0
+0.3
sulfur source
Sulfoacetic sulfur source
-0.3
+0.2
+0.1
-0.2
+0.1
survival
starvation expt 1; 3 days; outgrowth in CAAc
-0.1
+0.3
-0.1
-0.3
+0.1
carbon source
PM with succinate anaerobic with light
+0.2
+0.0
+0.1
-0.3
-0.2
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.0
+0.4
+0.0
-0.5
+0.0
sulfur source control
sulfur source control
-0.2
+0.5
-0.1
-0.0
-0.2
sulfur source
NFM with pyruvate
+0.5
-0.1
-0.2
-0.5
+0.5
carbon source dark aerobic
PM with butyrate aerobic in dark
+0.2
-0.1
+0.2
+0.1
-0.2
sulfur source
NFM with pyruvate
+0.1
-0.2
+0.1
+0.2
+0.3
sulfur source
sodium isethionate sulfur source
+0.4
+0.1
+0.3
+0.0
-0.3
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.3
+0.1
+0.2
+0.7
-0.1
carbon source
Citraconic (C); anaerobic
+0.1
+0.5
+0.0
+0.2
-0.1
carbon source
4-Aminobutyric (C); anaerobic
-0.0
+0.4
-0.1
+0.3
+0.1
carbon source
Fumarate (C); anaerobic
+0.4
+0.4
+0.1
-0.0
-0.1
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
+0.4
+0.2
+0.1
+0.4
-0.1
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