Fitness for 5 genes in Rhodopseudomonas palustris CGA009

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500 ntTX73_004300 and TX73_004305 are separated by 14 nucleotidesTX73_004305 and TX73_004310 are separated by 71 nucleotidesTX73_004310 and TX73_004315 are separated by 162 nucleotidesTX73_004315 and TX73_004320 overlap by 4 nucleotides TX73_004300: TX73_004300 - CoxF protein, at 929,898 to 930,065 _004300 TX73_004305: TX73_004305 - cytochrome c oxidase assembly protein, at 930,080 to 930,706 _004305 TX73_004310: TX73_004310 - cytochrome c oxidase subunit 3, at 930,778 to 931,632 _004310 TX73_004315: TX73_004315 - DUF983 domain-containing protein, at 931,795 to 932,190 _004315 TX73_004320: TX73_004320 - SURF1 family protein, at 932,187 to 932,990 _004320
Group Condition TX73_004300 TX73_004305 TX73_004310 TX73_004315 TX73_004320
carbon source dark aerobic PM with succinate and Sodium Formate aerobic in dark -3.8 -2.9 -4.4 -0.9 -3.6
carbon source dark aerobic PM with succinate and Sodium Formate aerobic in dark -1.2 -2.9 -3.3 -0.9 -2.8
carbon source dark aerobic PM with succinate aerobic in dark -1.4 -0.9 -0.7 -0.7 -1.1
carbon source dark aerobic PM with succinate aerobic in dark -0.5 -1.0 -1.1 -0.5 -1.0
carbon source dark aerobic PM with succinate aerobic in dark -0.5 -0.7 -0.9 -0.3 -1.2
carbon source dark aerobic PM with succinate aerobic in dark -0.7 -0.9 -0.9 -0.3 -1.1
carbon source dark aerobic PM with succinate aerobic in dark -0.8 -0.9 -0.9 -0.4 -0.6
carbon source dark aerobic PM with succinate aerobic in dark -0.4 -0.7 -0.5 -0.6 -0.8
carbon source MDC_bicarb with butyrate and Adenine -0.2 -0.1 -0.1 -0.3 -0.2
carbon source PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM -0.1 -0.4 +0.1 -0.3 -0.1
sulfur source Taurine sulfur source -0.2 -0.2 -0.1 +0.2 -0.2
carbon source MDC_bicarb with butyrate and Adenine -0.1 +0.2 +0.0 -0.3 -0.3
stress L-Lactate (C) with 10 mM Sodium Chloride -0.2 +0.5 +0.1 -0.5 -0.1
sulfur source control sulfur source control -0.3 +0.4 -0.0 -0.3 -0.0
carbon source MDC_bicarb with butyrate and Adenine -0.0 +0.3 -0.1 -0.4 +0.1
stress L-Lactate (C) with 10 mM Sodium Chloride -0.6 -0.0 +0.1 +0.0 +0.3
sulfur source Sulfoacetic sulfur source -0.3 +0.2 +0.1 -0.2 +0.1
survival starvation expt 1; 3 days; outgrowth in CAAc -0.1 +0.3 -0.1 -0.3 +0.1
carbon source PM with succinate anaerobic with light +0.2 +0.0 +0.1 -0.3 -0.2
carbon source acetate trihydrate and Sodium L-Lactate (C) +0.0 +0.4 +0.0 -0.5 +0.0
sulfur source control sulfur source control -0.2 +0.5 -0.1 -0.0 -0.2
sulfur source NFM with pyruvate +0.5 -0.1 -0.2 -0.5 +0.5
carbon source dark aerobic PM with butyrate aerobic in dark +0.2 -0.1 +0.2 +0.1 -0.2
sulfur source NFM with pyruvate +0.1 -0.2 +0.1 +0.2 +0.3
sulfur source sodium isethionate sulfur source +0.4 +0.1 +0.3 +0.0 -0.3
stress L-Lactate (C) with 10 mM Sodium Chloride -0.3 +0.1 +0.2 +0.7 -0.1
carbon source Citraconic (C); anaerobic +0.1 +0.5 +0.0 +0.2 -0.1
carbon source 4-Aminobutyric (C); anaerobic -0.0 +0.4 -0.1 +0.3 +0.1
carbon source Fumarate (C); anaerobic +0.4 +0.4 +0.1 -0.0 -0.1
stress PM_argon75_N2O25 butyrate and Chloride 0.1 mM +0.4 +0.2 +0.1 +0.4 -0.1
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