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Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_003470 and TX73_003475 overlap by 4 nucleotides
TX73_003475 and TX73_003480 overlap by 4 nucleotides
TX73_003480 and TX73_003485 are separated by 24 nucleotides
TX73_003485 and TX73_003490 are separated by 191 nucleotides
TX73_003470: TX73_003470 - 4-hydroxybenzoyl-CoA reductase subunit gamma, at 739,506 to 739,997
_003470
TX73_003475: TX73_003475 - 4-hydroxybenzoyl-CoA reductase subunit alpha, at 739,994 to 742,327
_003475
TX73_003480: TX73_003480 - 4-hydroxybenzoyl-CoA reductase subunit beta, at 742,324 to 743,307
_003480
TX73_003485: TX73_003485 - Crp/Fnr family transcriptional regulator, at 743,332 to 744,057
_003485
TX73_003490: TX73_003490 - Zn-dependent alcohol dehydrogenase, at 744,249 to 745,361
_003490
Group
Condition
TX73
_003470
TX73
_003475
TX73
_003480
TX73
_003485
TX73
_003490
carbon source
4-Hydroxybenzoate (C)
-7.2
-4.6
-5.1
-4.8
-0.1
carbon source
4-Hydroxybenzoate (C)
-6.0
-4.6
-4.5
-3.7
+0.1
carbon source
4-Hydroxybenzoate (C)
-2.7
-4.6
-5.3
-3.1
+0.1
sulfur source
sodium isethionate sulfur source
-0.7
-0.2
-0.0
-0.6
-0.1
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.4
-0.2
-0.2
-0.2
-0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.1
-0.1
-0.6
-0.0
-0.4
carbon source
Citraconic (C); anaerobic
-0.4
+0.2
+0.1
-0.6
+0.2
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.4
-0.1
-0.1
+0.3
-0.0
carbon source
PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM
-0.4
+0.2
+0.1
-0.3
+0.1
carbon source
Citraconic (C); anaerobic
+0.1
-0.1
-0.2
-0.4
+0.3
carbon source
Fumarate (C); anaerobic
-0.4
+0.1
-0.0
-0.1
+0.2
carbon source dark aerobic
PM with butyrate aerobic in dark
-0.2
-0.0
+0.2
-0.3
+0.2
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.4
-0.3
+0.1
-0.1
-0.2
sulfur source
Dimethylsulfoniopropionate sulfur source
-0.3
+0.1
+0.2
-0.1
+0.2
carbon source
Citraconic (C); anaerobic
+0.4
-0.0
-0.2
-0.2
+0.3
carbon source
L-Leucine (C); anaerobic
+0.3
+0.0
+0.1
-0.3
+0.2
carbon source
MDC_bicarb with butyrate and Adenine
+0.2
-0.0
-0.3
+0.3
+0.1
carbon source
MDC_bicarb with butyrate
-0.2
+0.2
+0.2
+0.3
-0.1
carbon source
L-Malic (C); anaerobic
+0.5
+0.1
+0.1
-0.3
+0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.2
-0.0
-0.4
+0.7
+0.0
sulfur source
sodium isethionate sulfur source
+0.3
+0.2
+0.1
-0.2
+0.1
carbon source
aspen wood chips that have been decomposed by a fungus (C)
+0.4
-0.1
+0.3
+0.1
+0.1
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
+0.4
-0.0
+0.3
+0.2
-0.1
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
+0.0
+0.2
+0.2
+0.3
+0.1
sulfur source
sodium isethionate sulfur source
+0.2
+0.1
+0.2
+0.1
+0.3
carbon source
Butyric Acid (C); anaerobic
+0.4
+0.1
+0.1
+0.2
+0.2
survival
starvation expt 2; 3 days; outgrowth in CAAc
+0.6
+0.0
-0.0
+0.1
+0.2
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
+0.2
+0.2
+0.3
+0.3
-0.0
sulfur source
NFM with pyruvate
+0.3
+0.1
+0.2
+0.4
+0.1
sulfur source
Thiamine HCl sulfur source
+0.5
+0.2
+0.2
+0.3
+0.2
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