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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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500 nt
TX73_002910 and TX73_002915 are separated by 170 nucleotides
TX73_002915 and TX73_002920 are separated by 4 nucleotides
TX73_002920 and TX73_002925 are separated by 374 nucleotides
TX73_002925 and TX73_002930 are separated by 162 nucleotides
TX73_002910: TX73_002910 - MmgE/PrpD family protein, at 623,979 to 625,343
_002910
TX73_002915: TX73_002915 - FUSC family protein, at 625,514 to 626,626
_002915
TX73_002920: TX73_002920 - DUF2269 family protein, at 626,631 to 627,092
_002920
TX73_002925: TX73_002925 - hypothetical protein, at 627,467 to 627,733
_002925
TX73_002930: TX73_002930 - PHB depolymerase family esterase, at 627,896 to 629,083
_002930
Group
Condition
TX73
_002910
TX73
_002915
TX73
_002920
TX73
_002925
TX73
_002930
carbon source
MDC_bicarb with butyrate
-0.0
-0.1
-0.2
-0.4
-0.2
carbon source
PM with succinate anaerobic with light
-0.2
-0.1
-0.3
-0.2
-0.2
carbon source dark aerobic
PM with butyrate aerobic in dark
-0.2
-0.2
-0.1
-0.2
-0.2
carbon source dark aerobic
PM with succinate aerobic in dark
-0.2
-0.2
-0.2
-0.1
-0.3
carbon source
MDC_bicarb with butyrate
-0.1
-0.1
-0.2
-0.3
-0.2
sulfur source
NFM with succinate
-0.2
-0.1
-0.1
-0.3
-0.1
carbon source
MDC_bicarb with butyrate and Adenine
-0.2
-0.2
+0.0
-0.1
-0.3
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-0.1
-0.2
-0.2
-0.2
-0.1
carbon source
MDC_bicarb with butyrate
-0.1
-0.3
-0.1
-0.1
-0.1
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-0.3
-0.1
-0.0
-0.4
-0.1
carbon source dark aerobic
PM with succinate aerobic in dark
-0.2
-0.1
-0.2
-0.2
-0.1
carbon source dark aerobic
PM with succinate aerobic in dark
-0.2
-0.2
-0.0
-0.1
-0.2
sulfur source
NFM with pyruvate
+0.1
-0.3
-0.5
+0.1
-0.1
sulfur source
NFM with pyruvate
-0.0
-0.3
-0.2
+0.1
-0.2
carbon source dark aerobic
PM with succinate aerobic in dark
-0.1
-0.1
-0.2
-0.1
-0.2
carbon source
PM with succinate anaerobic with light
-0.1
-0.2
-0.1
-0.1
-0.2
stress
Benzoate (C), sodium fluoride stress
-0.1
+0.1
-0.4
-0.2
-0.0
carbon source dark aerobic
PM with succinate aerobic in dark
-0.2
-0.2
-0.0
-0.1
-0.1
carbon source
PM with succinate and Sodium Formate anaerobic with light
-0.1
-0.2
-0.1
-0.2
-0.1
sulfur source
Taurine sulfur source
-0.1
-0.1
-0.2
-0.0
-0.1
carbon source
Citraconic (C); anaerobic
-0.2
-0.2
-0.1
-0.1
+0.0
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
-0.0
-0.1
+0.1
-0.4
-0.1
carbon source
MDC_bicarb with butyrate and Adenine
-0.1
-0.2
-0.2
+0.1
-0.2
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
-0.1
-0.1
+0.1
-0.2
-0.1
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
-0.2
-0.1
+0.1
-0.2
-0.1
carbon source
Citraconic (C); anaerobic
-0.3
-0.3
-0.0
+0.2
-0.0
carbon source
Citraconic (C); anaerobic
-0.2
-0.3
-0.0
+0.0
+0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.1
-0.2
+0.1
+0.2
+0.0
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.2
+0.0
-0.2
+0.2
+0.0
survival
starvation expt 3; 14 days; outgrowth in CAAc
-0.0
-0.1
+0.2
+0.2
+0.2
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TX73_002920
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