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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_002555 and TX73_002560 are separated by 300 nucleotides
TX73_002560 and TX73_002565 are separated by 324 nucleotides
TX73_002565 and TX73_002570 are separated by 23 nucleotides
TX73_002570 and TX73_002575 are separated by 24 nucleotides
TX73_002555: TX73_002555 - DUF3108 domain-containing protein, at 544,995 to 545,867
_002555
TX73_002560: TX73_002560 - 50S ribosomal protein L28, at 546,168 to 546,473
_002560
TX73_002565: TX73_002565 - PAS domain S-box protein, at 546,798 to 550,043
_002565
TX73_002570: TX73_002570 - esterase-like activity of phytase family protein, at 550,067 to 551,215
_002570
TX73_002575: TX73_002575 - cobaltochelatase subunit CobT, at 551,240 to 553,144
_002575
Group
Condition
TX73
_002555
TX73
_002560
TX73
_002565
TX73
_002570
TX73
_002575
sulfur source
NFM with pyruvate
+0.1
-3.2
-0.1
+0.0
N.D.
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.2
-3.1
-0.1
+0.3
N.D.
carbon source
Butyric Acid (C); anaerobic
+0.2
-2.5
-0.1
+0.0
N.D.
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.0
-1.7
-0.3
-0.0
N.D.
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.2
-2.1
-0.0
-0.0
N.D.
stress
PM_N2O butyrate and nitrate 0.1 mM
+0.1
-0.8
-1.1
-0.1
N.D.
stress
PM_N2O butyrate and nitrate 0.1 mM
+0.1
-0.4
-1.4
-0.0
N.D.
survival
starvation expt 3; 14 days; outgrowth in CAAc
-0.1
-2.0
+0.2
+0.0
N.D.
sulfur source
Taurine sulfur source
+0.2
-2.0
+0.2
-0.1
N.D.
carbon source
Pimelic (C); anaerobic
+0.0
-1.7
+0.1
+0.0
N.D.
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
+0.2
-1.3
-0.6
+0.1
N.D.
stress
PM_N2O butyrate and nitrate 0.1 mM
+0.1
-0.4
-1.0
-0.2
N.D.
stress
Benzoate (C), sodium fluoride stress
-0.2
-0.5
-0.7
-0.0
N.D.
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.1
-1.3
-0.1
-0.1
N.D.
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
+0.1
-0.8
-0.6
-0.1
N.D.
stress
PM_N2O butyrate and nitrate 0.1 mM
+0.1
-0.4
-1.1
-0.0
N.D.
carbon source
4-Aminobutyric (C); anaerobic
+0.3
-1.6
+0.0
+0.1
N.D.
survival outgrowth control
starvation outgrowth control in CAAc
+0.0
-1.3
+0.3
-0.2
N.D.
carbon source dark aerobic
PM with succinate aerobic in dark
+0.1
-1.1
+0.1
-0.1
N.D.
survival
starvation expt 4; 14 days; outgrowth in CAAc
-0.1
-1.2
+0.2
+0.0
N.D.
sulfur source
NFM with pyruvate
+0.2
-1.1
-0.1
+0.1
N.D.
carbon source
MDC_bicarb with butyrate and Adenine
+0.0
-1.0
+0.3
-0.2
N.D.
carbon source dark aerobic
PM with succinate aerobic in dark
+0.1
-1.1
+0.1
+0.1
N.D.
survival outgrowth control
starvation outgrowth control in CAAc
-0.1
-1.0
+0.4
+0.1
N.D.
carbon source dark aerobic
PM with succinate aerobic in dark
+0.1
-1.1
+0.2
+0.2
N.D.
survival
starvation expt 3; 3 days; outgrowth in CAAc
-0.0
-0.9
+0.4
+0.0
N.D.
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
+0.0
+0.8
-0.5
-0.2
N.D.
carbon source
4-Hydroxybenzoate (C)
+0.2
-1.2
+1.5
-0.2
N.D.
sulfur source
Dimethylsulfoniopropionate sulfur source
+0.2
-0.4
+0.9
+0.2
N.D.
carbon source
PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM
+0.1
+0.9
-0.3
+0.2
N.D.
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