Fitness for 5 genes in Rhodopseudomonas palustris CGA009

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500 ntTX73_002290 and TX73_002295 are separated by 12 nucleotidesTX73_002295 and TX73_002300 are separated by 128 nucleotidesTX73_002300 and TX73_002305 are separated by 200 nucleotidesTX73_002305 and TX73_002310 overlap by 4 nucleotides TX73_002290: TX73_002290 - phytanoyl-CoA dioxygenase family protein, at 487,809 to 488,657 _002290 TX73_002295: TX73_002295 - tRNA (guanine(46)-N(7))-methyltransferase TrmB, at 488,670 to 489,413 _002295 TX73_002300: TX73_002300 - helix-turn-helix domain-containing protein, at 489,542 to 489,961 _002300 TX73_002305: TX73_002305 - apolipoprotein N-acyltransferase, at 490,162 to 491,772 _002305 TX73_002310: TX73_002310 - hemolysin family protein, at 491,769 to 492,914 _002310
Group Condition TX73_002290 TX73_002295 TX73_002300 TX73_002305 TX73_002310
survival starvation expt 3; 14 days; outgrowth in CAAc +0.1 -2.0 -3.8 -0.6 +0.3
survival starvation expt 1; 14 days; outgrowth in CAAc +0.1 -1.7 -3.7 -0.1 +0.1
sulfur source control Dimethyl sulfide sulfur source -0.2 -0.7 -4.3 +0.3 -0.2
survival starvation expt 4; 14 days; outgrowth in CAAc +0.2 -1.9 -3.3 -0.1 +0.1
survival starvation expt 4; 7 days; outgrowth in CAAc +0.0 -1.2 -3.2 -0.1 +0.1
survival starvation expt 2; 14 days; outgrowth in CAAc +0.2 -2.0 -2.3 +0.1 +0.1
survival starvation expt 1; 7 days; outgrowth in CAAc -0.0 -0.8 -2.7 -0.5 +0.1
sulfur source control Dimethyl sulfide sulfur source -0.2 -0.4 -3.2 +0.1 +0.2
stress Benzoate (C), sodium fluoride stress +0.2 +0.3 -3.6 -0.1 -0.2
sulfur source Taurine sulfur source -0.3 -0.3 -2.9 +0.0 +0.1
survival starvation expt 3; 7 days; outgrowth in CAAc +0.1 -1.0 -2.3 -0.3 +0.2
sulfur source control Dimethyl sulfide sulfur source +0.0 -0.5 -2.8 -0.0 +0.1
sulfur source Dimethylsulfoniopropionate sulfur source +0.1 -0.7 -2.8 +0.2 +0.2
carbon source 4-Hydroxybenzoate (C) -0.0 -0.5 -2.7 +0.2 +0.1
carbon source L-Leucine (C); anaerobic -0.0 -0.3 -3.0 +0.3 +0.2
carbon source 4-Hydroxybenzoate (C) +0.1 -0.3 -3.3 +0.6 +0.1
sulfur source NFM_No_Mo_Plus_VCl3 with acetate trihydrate +0.2 -0.2 -3.0 +0.2 +0.2
sulfur source Thiamine HCl sulfur source -0.3 +0.3 -2.9 +0.3 -0.0
sulfur source Thiamine HCl sulfur source -0.2 +0.2 -2.8 +0.2 +0.1
carbon source PM with Formate and Sodium bicarbonate anaerobic with light -0.2 -0.2 -2.6 +0.3 +0.4
sulfur source Sulfoacetic sulfur source +0.2 -0.3 -2.5 +0.2 +0.3
carbon source dark aerobic PM with succinate aerobic in dark -0.3 +0.1 -2.3 +0.4 +0.2
carbon source Citraconic (C); anaerobic -0.2 -0.7 -1.7 -0.1 +0.8
carbon source 4-Aminobutyric (C); anaerobic +0.2 +0.4 -2.8 +0.1 +0.4
carbon source Citraconic (C); anaerobic +0.0 -0.8 -1.8 +0.3 +0.7
carbon source dark aerobic PM with succinate aerobic in dark +0.1 +0.3 -2.8 +0.5 +0.4
carbon source dark aerobic PM with succinate and Sodium Formate aerobic in dark +0.2 -0.2 -2.0 +0.9 -0.2
carbon source dark aerobic PM with succinate and Sodium Formate aerobic in dark -0.2 +0.1 -2.1 +1.1 -0.2
carbon source PM with succinate and Sodium Formate anaerobic with light -0.1 +0.3 -2.3 +0.5 +0.4
carbon source PM with succinate and Sodium Formate anaerobic with light +0.0 +0.3 -1.9 +0.8 +0.4
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TX73_002290
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TX73_002295
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TX73_002305
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TX73_002310
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