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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_002055 and TX73_002060 are separated by 4 nucleotides
TX73_002060 and TX73_002065 are separated by 186 nucleotides
TX73_002065 and TX73_002070 are separated by 153 nucleotides
TX73_002070 and TX73_002075 are separated by 127 nucleotides
TX73_002055: TX73_002055 - HD domain-containing protein, at 434,447 to 435,040
_002055
TX73_002060: TX73_002060 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 435,045 to 436,244
_002060
TX73_002065: TX73_002065 - invasion associated locus B family protein, at 436,431 to 437,006
_002065
TX73_002070: TX73_002070 - SDR family oxidoreductase, at 437,160 to 437,996
_002070
TX73_002075: TX73_002075 - IS481-like element ISRpa3 family transposase, at 438,124 to 439,293
_002075
Group
Condition
TX73
_002055
TX73
_002060
TX73
_002065
TX73
_002070
TX73
_002075
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.4
-0.1
+0.0
-0.3
-0.6
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-0.1
-0.1
-1.0
-0.1
-0.1
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
+0.0
-0.0
-0.9
-0.1
-0.1
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
+0.0
-0.1
-0.6
+0.0
+0.0
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
+0.1
+0.0
-0.4
-0.0
-0.2
sulfur source
NFM with succinate
+0.0
+0.1
-0.2
-0.2
-0.3
carbon source
4-Hydroxybenzoate (C)
+0.1
-0.3
-0.2
-0.0
-0.0
carbon source
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM
-0.2
+0.0
-0.2
+0.0
-0.2
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.2
-0.1
+0.2
-0.2
+0.0
sulfur source
Thiamine HCl sulfur source
-0.2
+0.1
-0.1
-0.1
-0.0
sulfur source
sodium isethionate sulfur source
-0.1
+0.1
+0.0
-0.2
-0.2
carbon source
MDC_bicarb with butyrate and Adenine
-0.1
+0.1
+0.1
-0.1
-0.4
carbon source
4-Hydroxybenzoate (C)
+0.2
-0.4
-0.1
+0.1
-0.1
sulfur source
NFM with succinate
-0.1
+0.1
-0.3
-0.1
+0.1
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.1
+0.2
-0.1
-0.3
+0.1
sulfur source
2-(Methylthio)ethanol sulfur source
-0.0
+0.2
-0.1
-0.1
-0.2
sulfur source
NFM with pyruvate
-0.3
-0.0
+0.7
-0.2
-0.3
sulfur source
NFM_No_Mo with acetate trihydrate
-0.1
+0.1
+0.2
-0.0
-0.2
carbon source
4-Hydroxybenzoate (C)
+0.2
-0.1
-0.1
+0.0
+0.1
carbon source dark aerobic
PM with butyrate aerobic in dark
-0.1
+0.2
+0.2
-0.0
-0.2
stress
PM_argon75_N2O25 with buyrate and 0.1 mM nitrate; in dark
+0.1
-0.2
+0.1
-0.1
+0.2
carbon source
MDC_bicarb with butyrate and Adenine
-0.1
+0.1
+0.3
+0.1
-0.2
carbon source
aspen wood chips that have been decomposed by a fungus (C)
+0.2
+0.0
+0.0
-0.2
+0.2
sulfur source
NFM_No_Mo_Plus_VCl3 with acetate trihydrate
+0.1
+0.0
+0.2
-0.1
+0.2
carbon source dark aerobic
PM with succinate aerobic in dark
+0.1
+0.1
+0.2
-0.1
+0.1
sulfur source
Dimethylsulfoniopropionate sulfur source
-0.1
+0.1
+0.3
-0.0
+0.2
sulfur source control
Dimethyl sulfide sulfur source
+0.1
+0.1
+0.1
-0.0
+0.2
carbon source
PM with succinate anaerobic with light
+0.0
+0.3
-0.0
+0.1
+0.1
carbon source
MDC_bicarb with butyrate
-0.1
+0.4
+0.1
+0.1
+0.0
carbon source
Butyric Acid (C); anaerobic
-0.0
+0.3
+0.0
+0.1
+0.1
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