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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_001875 and TX73_001880 are separated by 14 nucleotides
TX73_001880 and TX73_001885 are separated by 78 nucleotides
TX73_001885 and TX73_001890 are separated by 93 nucleotides
TX73_001890 and TX73_001895 are separated by 98 nucleotides
TX73_001875: TX73_001875 - class A beta-lactamase, at 392,648 to 393,523
_001875
TX73_001880: TX73_001880 - endonuclease/exonuclease/phosphatase family protein, at 393,538 to 394,665
_001880
TX73_001885: TX73_001885 - sulfite exporter TauE/SafE family protein, at 394,744 to 395,547
_001885
TX73_001890: TX73_001890 - MBL fold metallo-hydrolase, at 395,641 to 396,537
_001890
TX73_001895: TX73_001895 - hypothetical protein, at 396,636 to 396,998
_001895
Group
Condition
TX73
_001875
TX73
_001880
TX73
_001885
TX73
_001890
TX73
_001895
sulfur source control
sulfur source control
-0.2
-0.1
-0.1
+0.1
-0.1
sulfur source
sodium isethionate sulfur source
-0.3
-0.1
+0.1
+0.0
-0.2
sulfur source control
sulfur source control
+0.3
-0.2
-0.2
+0.0
-0.4
carbon source dark aerobic
PM with butyrate aerobic in dark
-0.3
+0.0
+0.2
+0.0
-0.3
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.3
-0.4
+0.0
+0.1
-0.2
carbon source
4-Hydroxybenzoate (C)
-0.1
+0.2
-0.0
+0.1
-0.2
carbon source
L-Leucine (C); anaerobic
-0.1
+0.1
+0.2
-0.1
-0.2
sulfur source control
sulfur source control
+0.0
-0.1
-0.2
+0.0
+0.2
carbon source
Azelaic (C); anaerobic
+0.2
-0.2
+0.1
-0.0
-0.1
sulfur source
Sulfoacetic sulfur source
+0.0
+0.2
+0.1
-0.0
-0.3
sulfur source
NFM with pyruvate
+0.2
-0.1
+0.2
+0.1
-0.3
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.5
+0.1
+0.1
-0.2
-0.3
carbon source
MDC_bicarb with butyrate and Adenine
+0.0
+0.4
-0.0
-0.2
+0.0
carbon source
MDC_bicarb with butyrate and Adenine
+0.2
+0.3
-0.1
-0.1
-0.0
carbon source
Sebacic (C); anaerobic
+0.2
-0.1
+0.1
-0.1
+0.1
stress
Benzoate (C), sodium fluoride stress
+0.2
-0.3
+0.1
+0.1
+0.3
carbon source
Pimelic (C); anaerobic
+0.2
-0.1
+0.0
-0.1
+0.2
carbon source
L-Malic (C); anaerobic
+0.3
-0.0
+0.1
-0.1
+0.1
sulfur source
Thiamine HCl sulfur source
+0.1
+0.3
-0.0
-0.1
+0.2
carbon source
Pimelic (C); anaerobic
+0.4
-0.1
+0.1
-0.1
+0.1
survival
starvation expt 2; 14 days; outgrowth in CAAc
+0.2
+0.1
-0.0
-0.0
+0.3
survival outgrowth control
starvation outgrowth control in CAAc
+0.2
-0.1
+0.2
+0.0
+0.2
carbon source
MDC_bicarb with butyrate and Adenine
+0.3
+0.3
-0.1
+0.1
-0.0
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.2
+0.1
-0.0
-0.0
+0.2
carbon source
Azelaic (C); anaerobic
+0.3
-0.1
+0.1
+0.0
+0.3
survival
starvation expt 4; 3 days; outgrowth in CAAc
+0.2
-0.0
+0.2
+0.1
+0.2
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
+0.0
-0.0
-0.0
+0.1
+0.5
survival outgrowth control
starvation outgrowth control in CAAc
+0.2
-0.0
+0.3
+0.0
+0.1
carbon source
MDC_bicarb with butyrate and Adenine
+0.3
+0.2
+0.3
-0.2
+0.1
carbon source
aspen wood chips that have been decomposed by a fungus (C)
+0.1
+0.2
-0.0
+0.1
+0.5
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