Fitness for 5 genes in Rhodopseudomonas palustris CGA009

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500 ntTX73_001570 and TX73_001575 are separated by 463 nucleotidesTX73_001575 and TX73_001580 overlap by 23 nucleotidesTX73_001580 and TX73_001585 are separated by 5 nucleotidesTX73_001585 and TX73_001590 are separated by 335 nucleotides TX73_001570: TX73_001570 - protein-export chaperone SecB, at 331,955 to 332,428 _001570 TX73_001575: TX73_001575 - Tim44/TimA family putative adaptor protein, at 332,892 to 333,599 _001575 TX73_001580: TX73_001580 - murein transglycosylase A, at 333,577 to 335,070 _001580 TX73_001585: TX73_001585 - Smr/MutS family protein, at 335,076 to 335,660 _001585 TX73_001590: TX73_001590 - ATP-dependent protease ATPase subunit HslU, at 335,996 to 337,297 _001590
Group Condition TX73_001570 TX73_001575 TX73_001580 TX73_001585 TX73_001590
carbon source dark aerobic PM with succinate and Sodium Formate aerobic in dark -2.4 -2.2 +0.1 -0.1 -0.7
carbon source dark aerobic PM with succinate and Sodium Formate aerobic in dark -2.7 -1.4 +0.0 -0.1 -0.7
carbon source 4-Hydroxybenzoate (C) -3.3 -1.5 -0.1 -0.0 +0.3
carbon source 4-Hydroxybenzoate (C) -3.6 -0.7 +0.1 +0.1 +0.0
survival starvation expt 2; 14 days; outgrowth in CAAc -2.1 -1.0 -0.1 -0.1 -0.6
carbon source 4-Hydroxybenzoate (C) -3.1 -0.3 +0.1 -0.1 -0.1
sulfur source NFM_No_Mo_Plus_VCl3 with acetate trihydrate -2.7 -0.1 +0.0 -0.1 -0.1
carbon source PM with succinate and Sodium Formate anaerobic with light -2.6 -0.2 +0.1 -0.1 +0.0
survival starvation expt 4; 14 days; outgrowth in CAAc -1.2 -1.1 -0.1 -0.1 -0.2
survival starvation expt 1; 14 days; outgrowth in CAAc -1.6 -0.8 -0.0 -0.0 -0.2
carbon source dark aerobic PM with butyrate aerobic in dark -2.7 -0.0 +0.1 +0.1 -0.1
carbon source 4-Aminobutyric (C); anaerobic -1.6 -0.7 -0.1 -0.1 -0.1
survival outgrowth control starvation outgrowth control in CAAc -2.5 +0.0 -0.0 +0.2 -0.1
survival starvation expt 1; 7 days; outgrowth in CAAc -1.9 -0.5 -0.0 -0.0 -0.0
survival starvation expt 2; 3 days; outgrowth in CAAc -2.1 -0.2 -0.1 -0.0 -0.1
coculture dpurH coculture with Glucose and NaCl and NH4Cl -2.3 -0.1 -0.0 -0.1 +0.0
stress PM_argon75_N2O25 with buyrate and 0.1 mM nitrate; in dark -2.3 -0.1 +0.0 +0.0 -0.1
survival starvation expt 3; 14 days; outgrowth in CAAc -0.8 -1.1 -0.0 -0.1 -0.3
survival starvation expt 2; 7 days; outgrowth in CAAc -1.5 -0.5 -0.0 -0.1 -0.2
carbon source Azelaic (C); anaerobic -2.2 -0.0 -0.1 -0.0 +0.0
sulfur source 2-(Methylthio)ethanol sulfur source -2.1 -0.3 -0.0 +0.1 -0.0
carbon source Citraconic (C); anaerobic -2.3 +0.0 +0.1 -0.3 +0.1
carbon source dark aerobic PM with butyrate aerobic in dark -2.1 -0.1 +0.1 -0.0 +0.0
carbon source Azelaic (C); anaerobic -2.0 -0.2 -0.0 -0.1 +0.2
carbon source MDC_bicarb with butyrate -1.9 +0.2 -0.0 -0.0 -0.1
stress PM_argon75_N2O25 butyrate and Chloride 0.1 mM -1.9 +0.4 -0.0 -0.0 -0.1
carbon source dark aerobic PM with butyrate aerobic in dark -1.9 +0.2 +0.2 +0.2 -0.2
stress L-Lactate (C) with 10 mM Sodium Chloride -2.0 +0.7 +0.2 -0.1 -0.2
stress L-Lactate (C) with 10 mM Sodium Chloride -0.9 +1.2 +0.2 -0.2 -0.4
stress L-Lactate (C) with 10 mM Sodium Chloride -0.9 +1.0 +0.1 +0.1 -0.3
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