Fitness for 5 genes in Rhodopseudomonas palustris CGA009

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500 ntTX73_000880 and TX73_000885 are separated by 150 nucleotidesTX73_000885 and TX73_000890 are separated by 38 nucleotidesTX73_000890 and TX73_000895 are separated by 136 nucleotidesTX73_000895 and TX73_000900 are separated by 271 nucleotides TX73_000880: TX73_000880 - S41 family peptidase, at 187,815 to 189,191 _000880 TX73_000885: TX73_000885 - divergent polysaccharide deacetylase family protein, at 189,342 to 190,580 _000885 TX73_000890: TX73_000890 - RNA pyrophosphohydrolase, at 190,619 to 191,125 _000890 TX73_000895: TX73_000895 - glycosyltransferase family 1 protein, at 191,262 to 192,332 _000895 TX73_000900: TX73_000900 - SDR family oxidoreductase, at 192,604 to 193,551 _000900
Group Condition TX73_000880 TX73_000885 TX73_000890 TX73_000895 TX73_000900
stress L-Lactate (C) with 10 mM Sodium Chloride N.D. -0.3 -0.5 -1.2 -1.0
stress L-Lactate (C) with 10 mM Sodium Chloride N.D. -0.2 -0.5 -1.1 -0.8
carbon source 4-Hydroxybenzoate (C) N.D. +0.3 -0.3 -1.6 -0.8
carbon source PM with succinate anaerobic with light N.D. +0.1 +0.1 -0.8 -1.2
carbon source 4-Hydroxybenzoate (C) N.D. +0.3 -0.0 -0.8 -1.0
carbon source 4-Hydroxybenzoate (C) N.D. +0.6 +0.8 -1.3 -1.6
carbon source PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM N.D. +0.3 -0.8 -0.4 -0.4
carbon source dark aerobic PM with succinate and Sodium Formate aerobic in dark N.D. +2.9 -3.0 -0.6 -0.7
carbon source 4-Aminobutyric (C); anaerobic N.D. -0.1 -1.7 +0.1 +0.4
carbon source 4-Aminobutyric (C); anaerobic N.D. -0.1 -1.9 +0.3 +0.5
carbon source dark aerobic PM with succinate aerobic in dark N.D. +0.6 -0.3 -0.4 -1.1
monoculture OAcsForEtOH (C); monoculture N.D. +1.1 -0.3 -1.3 -0.7
carbon source 4-Aminobutyric (C); anaerobic N.D. -0.1 -1.5 +0.2 +0.3
carbon source 4-Aminobutyric (C); anaerobic N.D. -0.2 -1.4 +0.2 +0.3
sulfur source Thiamine HCl sulfur source N.D. +0.3 +0.3 -0.7 -0.9
carbon source dark aerobic PM with succinate aerobic in dark N.D. +0.7 -0.4 -0.4 -0.6
monoculture OAcsForEtOH (C); monoculture N.D. +1.0 -0.2 -0.7 -0.7
coculture dpurH coculture with Glucose and NaCl and NH4Cl N.D. +0.9 +0.3 -0.7 -0.9
survival starvation expt 3; 14 days; outgrowth in CAAc N.D. +0.3 +0.8 -0.8 -0.5
monoculture OAcsForEtOH (C); monoculture N.D. +1.0 -0.2 -0.6 -0.5
stress PM_N2O butyrate and nitrate 0.1 mM N.D. +0.6 -1.3 -0.0 +0.6
sulfur source NFM with pyruvate N.D. -0.5 -0.6 +0.1 +0.9
carbon source dark aerobic PM with succinate and Sodium Formate aerobic in dark N.D. +3.1 -2.4 -0.4 -0.2
stress PM_N2O butyrate and nitrate 0.1 mM N.D. +0.5 -0.9 +0.3 +0.4
stress PM_N2O butyrate and nitrate 0.1 mM N.D. +0.8 -1.1 +0.3 +0.4
survival starvation expt 1; 14 days; outgrowth in CAAc N.D. +0.3 +1.0 -0.5 -0.3
stress PM_N2O butyrate and nitrate 0.1 mM N.D. +0.9 -0.9 +0.2 +0.5
carbon source MDC_bicarb with butyrate N.D. +0.9 -0.3 +0.6 +0.5
sulfur source Dimethylsulfoniopropionate sulfur source N.D. +0.2 +0.8 +0.9 +0.7
sulfur source control Dimethyl sulfide sulfur source N.D. +0.2 +0.9 +0.7 +0.7
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