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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc04058 and SMc04059 are separated by 210 nucleotides
SMc04059 and SMc04460 are separated by 233 nucleotides
SMc04460 and SMc03922 overlap by 4 nucleotides
SMc03922 and SMc03923 are separated by 113 nucleotides
SMc04058: SMc04058 - hypothetical protein, at 3,062,692 to 3,063,570
SMc04058
SMc04059: SMc04059 - hypothetical protein, at 3,063,781 to 3,065,013
SMc04059
SMc04460: SMc04460 - glycogen phosphorylase, at 3,065,247 to 3,067,712
SMc04460
SMc03922: SMc03922 - glycogen branching protein, at 3,067,709 to 3,069,919
SMc03922
SMc03923: SMc03923 - glucose-1-phosphate adenylyltransferase, at 3,070,033 to 3,071,295
SMc03923
Group
Condition
SMc04058
SMc04059
SMc04460
SMc03922
SMc03923
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.0
-0.1
-0.5
-0.5
-0.7
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.2
-0.2
-0.4
-0.5
-0.5
stress
Fusidic 0.0001 mg/ml
-0.4
+0.0
-0.1
-0.0
-1.3
stress
Nickel (II) chloride 0.5 mM
-0.3
-0.2
-0.2
-0.2
-0.8
stress
Cobalt chloride 0.16 mM
-0.3
-0.3
-0.1
-0.0
-1.0
r2a control
R2A control for volatile experiments
-0.0
+0.1
-0.7
-0.5
-0.5
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
+0.2
-0.5
-0.5
-0.8
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
-0.0
-0.5
-0.5
-0.5
r2a control
R2A control for volatile experiments
+0.3
+0.1
-0.7
-0.4
-0.6
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
-0.0
-0.4
-0.4
-0.6
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.3
+0.0
-0.4
-0.4
-0.7
carbon source
D-Mannose (C)
+0.1
+0.1
-0.3
-0.6
-0.4
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.2
-0.1
-0.3
-0.5
-0.5
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.0
-0.5
-0.0
+0.3
-1.0
stress
Sisomicin 0.004 mg/ml
-0.2
+0.2
+0.0
-0.4
-0.7
stress
Thallium(I) acetate 0.0025 mg/ml
-0.5
+0.1
+0.2
-0.3
-0.5
nitrogen source
L-Asparagine (N)
-0.4
+0.5
-0.0
-0.4
-0.3
tsb
Day4 LB
-0.0
-0.0
+0.4
+0.7
-0.9
nitrogen source
nitrate (N)
-0.3
+0.1
+0.4
-0.2
+0.7
nitrogen source
L-Leucine (N)
-0.2
+0.3
+0.5
-0.3
+0.4
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.1
+0.5
+0.8
-0.3
-0.1
carbon source
Maltitol (C)
+0.0
+0.2
+0.6
-0.2
+0.6
stress
Nickel (II) chloride 1 mM
-0.1
-0.1
+0.9
+0.6
-0.1
nutrient
Min media with glucose
-0.1
-0.2
+0.9
-0.2
+0.9
nutrient
Min media with glucose
-0.2
-0.1
+0.9
-0.0
+0.8
carbon source
Uridine (C)
-0.1
-0.0
+0.8
+0.5
+0.6
carbon source
D-Sorbitol (C)
+0.2
-0.0
+0.7
+0.2
+0.8
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.2
+0.2
+1.0
+0.3
+0.6
nitrogen source
L-Arginine (N)
-0.1
+0.3
+0.8
+0.3
+0.6
carbon source
D-Glucosamine Hydrochloride (C)
-0.1
-0.1
+1.3
+1.0
+1.4
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