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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc04405 and SMc04406 are separated by 128 nucleotides
SMc04406 and SMc04407 are separated by 100 nucleotides
SMc04407 and SMc04881 are separated by 518 nucleotides
SMc04881 and SMc04408 overlap by 4 nucleotides
SMc04405: SMc04405 - 3-isopropylmalate dehydrogenase, at 3,611,782 to 3,612,894
SMc04405
SMc04406: SMc04406 - hypothetical protein, at 3,613,023 to 3,613,730
SMc04406
SMc04407: SMc04407 - transport transmembrane protein, at 3,613,831 to 3,615,720
SMc04407
SMc04881: SMc04881 - virulence associated protein, at 3,616,239 to 3,616,643
SMc04881
SMc04408: SMc04408 - virulence-associated protein, at 3,616,640 to 3,616,900
SMc04408
Group
Condition
SMc04405
SMc04406
SMc04407
SMc04881
SMc04408
carbon source
pyruvate (C)
-8.1
-0.4
-1.0
-0.4
N.D.
carbon source
D,L-Lactate (C)
-8.5
-0.3
-0.4
-0.1
N.D.
carbon source
L-Fucose (C)
-8.6
-0.4
-0.2
+0.0
N.D.
carbon source
L-Rhamnose (C)
-8.4
-0.6
-0.0
+0.0
N.D.
carbon source
L-Glutamine (C)
-8.6
+0.0
-0.2
-0.2
N.D.
carbon source
D-Maltose (C)
-8.4
+0.2
-0.2
-0.4
N.D.
carbon source
L-Malic (C)
-8.4
-0.2
-0.1
-0.1
N.D.
carbon source
D-Galactose (C)
-8.4
-0.2
-0.1
+0.1
N.D.
carbon source
palatinose (C)
-8.2
-0.3
+0.0
-0.2
N.D.
carbon source
L-Proline (C)
-8.5
+0.1
-0.1
-0.1
N.D.
carbon source
D-Leucrose (C)
-7.8
-0.7
-0.0
-0.0
N.D.
carbon source
L-Lysine (C)
-8.5
-0.1
-0.2
+0.3
N.D.
carbon source
L-Histidine (C)
-8.2
+0.1
-0.1
-0.3
N.D.
carbon source
Beta-Lactose (C)
-8.0
-0.4
+0.0
-0.0
N.D.
carbon source
D-Raffinose (C)
-8.1
+0.2
-0.0
-0.3
N.D.
carbon source
Glycerol (C)
-7.6
+0.3
-0.2
-0.7
N.D.
carbon source
palatinose (C)
-8.0
-0.4
+0.1
+0.3
N.D.
carbon source
Mannobiose (C)
-8.1
-0.0
+0.0
+0.2
N.D.
carbon source
Sucrose (C)
-8.1
+0.3
-0.1
-0.1
N.D.
carbon source
D-Glucose (C)
-8.3
+0.2
+0.0
+0.3
N.D.
carbon source
D-Trehalose (C)
-7.9
+0.0
+0.1
+0.0
N.D.
carbon source
methyl-beta-D-xylopyranoside (C)
-7.6
+0.2
-0.1
-0.1
N.D.
carbon source
D-Arabinose (C)
-8.0
+0.3
-0.0
+0.1
N.D.
carbon source
Lactulose (C)
-7.8
-0.1
+0.1
+0.2
N.D.
carbon source
L-Lactate (C)
-7.9
-0.2
+0.2
+0.3
N.D.
carbon source
D-Leucrose (C)
-7.7
+0.0
-0.1
+0.2
N.D.
carbon source
NAG (C)
-7.7
+0.0
-0.0
+0.3
N.D.
carbon source
succinate (C)
-8.0
+0.5
-0.0
+0.2
N.D.
carbon source
D-Glucose (C)
-7.4
-0.1
-0.1
+0.4
N.D.
nitrogen source
L-Asparagine (N)
-7.3
-0.1
-0.0
+1.0
N.D.
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