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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc04233 and SMc04234 are separated by 830 nucleotides
SMc04234 and SMc04235 are separated by 127 nucleotides
SMc04235 and SMc04236 are separated by 446 nucleotides
SMc04236 and SMc04237 are separated by 159 nucleotides
SMc04233: SMc04233 - hypothetical protein, at 2,059,894 to 2,060,511
SMc04233
SMc04234: SMc04234 - cold shock-like transcription regulator protein, at 2,061,342 to 2,061,554
SMc04234
SMc04235: SMc04235 - tRNA-dihydrouridine synthase A, at 2,061,682 to 2,062,761
SMc04235
SMc04236: SMc04236 - glycine-rich cell wall structural transmembrane protein, at 2,063,208 to 2,063,960
SMc04236
SMc04237: SMc04237 - hypothetical protein, at 2,064,120 to 2,064,368
SMc04237
Group
Condition
SMc04233
SMc04234
SMc04235
SMc04236
SMc04237
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
N.D.
+0.3
-2.6
-0.3
pH
LB, pH6
-1.1
N.D.
-0.3
-1.0
-0.2
carbon source
D-Ribose (C)
-0.7
N.D.
-0.4
-0.9
-0.5
nitrogen source
nitrate (N)
+0.1
N.D.
+0.2
-1.5
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.0
N.D.
+0.5
-0.8
-0.1
nitrogen source
L-Serine (N)
-1.5
N.D.
+0.4
-0.2
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-2.0
N.D.
+0.6
-0.1
+0.2
nutrient
Min media with glucose
-0.6
N.D.
+0.7
-0.7
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.5
N.D.
+0.0
+0.3
+0.5
nitrogen source
L-Asparagine (N)
-0.6
N.D.
+1.2
+0.3
-0.7
lb
LB
-0.9
N.D.
+2.1
-1.1
+0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
-1.1
N.D.
+1.4
+0.3
+0.1
stress
Paraquat dichloride 0.2 mg/ml
-0.5
N.D.
+1.5
+0.5
-0.2
pH
LB, pH8
-0.5
N.D.
+2.0
-0.4
+0.2
stress
Paraquat dichloride 0.3 mg/ml
-0.8
N.D.
+1.5
+0.5
+0.3
lb
LB
-1.1
N.D.
+2.4
+0.3
-0.0
stress
D-Cycloserine 0.05 mg/ml
-0.4
N.D.
+2.5
-0.3
-0.1
stress
Chloride 200 mM
-0.5
N.D.
+1.3
+0.2
+0.6
stress
Cisplatin 0.0005 mg/ml
+0.7
N.D.
+1.5
-0.2
-0.3
stress
Cobalt chloride 0.16 mM
-0.4
N.D.
+1.7
+0.3
+0.4
stress
Cisplatin 0.001 mg/ml
-0.5
N.D.
+1.8
+0.3
+0.4
stress
Fusidic 0.0001 mg/ml
+0.4
N.D.
+1.5
-0.0
+0.3
pH
LB, pH8
-0.2
N.D.
+2.2
-0.1
+0.2
carbon source
NAG (C)
+0.4
N.D.
+0.9
+0.8
+0.3
lb
LB
-0.2
N.D.
+2.6
+0.1
+0.0
stress
Paraquat dichloride 0.2 mg/ml
+0.6
N.D.
+2.0
-0.3
+0.5
stress
perchlorate 10 mM
-0.6
N.D.
+3.0
+0.2
+0.1
stress
Paraquat dichloride 0.05 mg/ml
-0.1
N.D.
+2.0
+0.4
+0.6
carbon source
Lactitol (C)
-0.3
N.D.
+0.6
+3.2
-0.0
carbon source
Lactitol (C)
+0.2
N.D.
+0.4
+3.0
+0.1
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