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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc04229 and SMc04230 are separated by 29 nucleotides
SMc04230 and SMc04231 are separated by 214 nucleotides
SMc04231 and SMc04232 are separated by 298 nucleotides
SMc04232 and SMc04233 are separated by 279 nucleotides
SMc04229: SMc04229 - hypothetical protein, at 2,054,592 to 2,055,182
SMc04229
SMc04230: SMc04230 - transmembrane signal peptide protein, at 2,055,212 to 2,055,565
SMc04230
SMc04231: SMc04231 - excinuclease ABC subunit B, at 2,055,780 to 2,058,737
SMc04231
SMc04232: SMc04232 - glycine rich transmembrane protein, at 2,059,036 to 2,059,614
SMc04232
SMc04233: SMc04233 - hypothetical protein, at 2,059,894 to 2,060,511
SMc04233
Group
Condition
SMc04229
SMc04230
SMc04231
SMc04232
SMc04233
stress
copper (II) chloride 1 mM
-0.2
-2.9
-0.5
-0.8
-0.2
stress
Chlorite 0.1 mM
-0.7
-0.2
-1.1
-1.6
-0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.3
-0.9
-1.3
-0.9
nitrogen source
L-Serine (N)
-0.4
-0.3
-0.8
-0.1
-1.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-0.0
-1.1
+0.2
-2.0
carbon source
D-Glucose (C)
-0.4
-0.7
-0.6
-0.7
-0.7
lb
LB
+0.1
-0.4
-1.0
-0.5
-1.1
carbon source
D-Maltose (C)
-0.2
-0.9
-0.6
-0.4
-0.8
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.2
-1.6
-0.6
-0.5
pH
LB, pH6
-0.2
-0.1
-0.8
-0.5
-1.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.2
+0.0
-2.2
-0.1
-0.5
stress
Cisplatin 0.0005 mg/ml
+0.1
-0.3
-2.6
-0.4
+0.7
stress
Cisplatin 0.001 mg/ml
+0.6
-0.3
-1.8
-0.2
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.3
-1.1
+0.4
-1.0
tsb
Day4 LB
+0.0
-0.2
-2.1
+0.3
-0.3
carbon source
D-Tagatose (C)
-0.2
+0.1
-0.6
-0.0
-1.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.3
-1.1
+0.9
-1.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
+0.3
-1.9
+0.5
-0.4
stress
Paraquat dichloride 0.3 mg/ml
+0.2
+0.4
-0.4
-1.1
-0.8
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.4
+0.1
-2.4
+0.4
-0.0
stress
Nickel (II) chloride 1 mM
+0.1
+0.3
-1.7
+0.1
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.1
-1.4
+0.7
-0.8
stress
Paraquat dichloride 0.2 mg/ml
+0.5
+0.3
-0.8
-0.7
-0.5
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.2
-0.3
-0.6
+1.0
-1.1
pH
LB, pH6
+0.1
+0.2
-1.1
+0.5
-0.5
stress
Chloride 200 mM
+0.3
+0.1
-1.1
+0.5
-0.5
stress
copper (II) chloride 1 mM
+0.1
+0.4
-1.0
+0.7
-0.8
nitrogen source
L-Asparagine (N)
+0.2
-0.1
-0.0
+1.6
-0.6
stress
Paraquat dichloride 0.2 mg/ml
+0.5
-0.4
-0.1
+0.8
+0.6
carbon source
D,L-Lactate (C)
+0.5
+0.3
+0.4
+0.8
+0.6
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