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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc04216 and SMc04217 overlap by 4 nucleotides
SMc04217 and SMc04218 are separated by 19 nucleotides
SMc04218 and SMc04219 overlap by 4 nucleotides
SMc04219 and SMc04220 are separated by 120 nucleotides
SMc04216: SMc04216 - hypothetical protein, at 2,044,306 to 2,044,527
SMc04216
SMc04217: SMc04217 - transmembrane signal peptide protein, at 2,044,524 to 2,045,225
SMc04217
SMc04218: SMc04218 - transport transmembrane protein, at 2,045,245 to 2,046,006
SMc04218
SMc04219: SMc04219 - ABC transporter ATP-binding protein, at 2,046,003 to 2,046,929
SMc04219
SMc04220: SMc04220 - transcriptional regulator, at 2,047,050 to 2,047,367
SMc04220
Group
Condition
SMc04216
SMc04217
SMc04218
SMc04219
SMc04220
stress
Chlorite 0.1 mM
-0.7
-0.8
-0.6
-0.5
-0.6
temperature
LB, 23C
-0.9
-0.4
-0.3
-0.6
-1.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.1
-0.5
-0.1
-0.9
-0.0
nitrogen source
L-Arginine (N)
+0.0
-0.1
-0.1
-1.3
-1.1
pH
LB, pH6
+0.7
-0.3
-0.3
-0.1
-2.5
pH
LB, pH6
+0.2
+0.3
+0.1
+0.0
-2.9
stress
Cisplatin 0.001 mg/ml
-0.5
+0.1
-0.0
-0.6
-1.2
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.1
-0.9
-0.4
-0.5
-0.5
nitrogen source
L-Asparagine (N)
-0.2
-0.6
+0.0
-0.7
-0.7
stress
Aluminum chloride
-0.3
-0.6
-0.1
-0.3
-0.7
nitrogen source
L-Histidine (N)
-0.9
-0.3
+0.2
-0.6
-0.4
stress
3-octanone 5.310333333 mM
+0.5
-0.0
-0.1
+0.2
-1.8
stress
Nickel (II) chloride 1 mM
-0.9
-0.4
-0.1
+0.4
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
-0.2
-0.2
-0.9
+1.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.2
-0.5
-0.5
+0.3
+0.9
lb
LB
+0.4
-0.1
+0.2
-0.1
-1.1
carbon source
Myristic (C)
+0.1
-0.3
+0.2
+0.3
-0.9
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-1.0
+0.4
-0.1
-0.3
+0.3
carbon source
Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
+0.6
-0.2
+0.1
+0.3
-1.2
carbon source
succinate (C)
+0.7
-0.0
+0.0
+0.1
-1.0
carbon source
D-Xylose (C)
+0.1
+0.2
+0.1
+0.4
-1.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.2
+0.0
-0.4
+1.2
carbon source
D-Trehalose (C)
-0.6
+0.4
+0.1
+0.3
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.6
-0.3
-0.3
+2.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.7
+0.2
-0.0
+0.1
+1.4
nitrogen source
Cytosine (N)
-0.3
-0.1
+0.2
+0.0
+1.2
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.5
+0.2
+0.2
-0.3
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
+0.4
+0.1
-0.6
+1.3
stress
nitrate 40 mM
+0.1
+0.1
-0.0
-0.2
+1.7
stress
copper (II) chloride 1 mM
+0.5
+0.3
+0.1
-0.2
+1.0
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