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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc04176 and SMc04177 are separated by 132 nucleotides
SMc04177 and SMc04178 are separated by 38 nucleotides
SMc04178 and SMc04179 are separated by 1 nucleotides
SMc04179 and SMc04180 are separated by 272 nucleotides
SMc04176: SMc04176 - transmembrane protein, at 2,165,371 to 2,167,935
SMc04176
SMc04177: SMc04177 - hypothetical protein, at 2,168,068 to 2,168,529
SMc04177
SMc04178: SMc04178 - hypothetical protein, at 2,168,568 to 2,169,287
SMc04178
SMc04179: SMc04179 - transmembrane protein, at 2,169,289 to 2,171,064
SMc04179
SMc04180: SMc04180 - transmembrane protein, at 2,171,337 to 2,171,768
SMc04180
Group
Condition
SMc04176
SMc04177
SMc04178
SMc04179
SMc04180
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
-0.3
-0.2
-0.3
-0.3
r2a control
R2A control for volatile experiments
-0.1
-0.4
-0.2
-0.4
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.2
-0.3
-0.0
-0.3
tsb
Day4 LB
-0.1
-0.0
+0.0
-1.1
+0.2
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.1
-0.0
-0.2
-0.5
-0.0
pH
LB, pH6
-0.1
-0.4
-0.2
-0.3
+0.1
r2a control
R2A control for volatile experiments
-0.1
+0.1
-0.1
-0.5
-0.2
r2a control
R2A control for volatile experiments
-0.0
-0.5
+0.3
-0.4
-0.1
stress
3-octanone 0.456 mM
-0.0
+0.3
-0.6
-0.1
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.3
-0.3
+0.4
-0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.3
-0.4
+0.1
-0.3
carbon source
Uridine (C)
-0.1
+0.2
+0.2
-0.3
-0.2
stress
Thallium(I) acetate 0.0025 mg/ml
+0.0
+0.4
-0.4
-0.2
+0.0
carbon source
acetate (C)
-0.1
+0.3
-0.0
-0.3
+0.1
stress
perchlorate 10 mM
+0.0
+0.2
-0.6
+0.2
+0.1
stress
Nickel (II) chloride 1 mM
+0.0
+0.5
-0.2
-0.1
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.5
-0.2
+0.1
-0.2
nitrogen source
L-Histidine (N)
-0.1
+0.3
-0.3
+0.2
+0.0
stress
Thallium(I) acetate 0.001 mg/ml
+0.1
+0.3
-0.3
+0.2
-0.0
stress
sodium fluoride 100 mM
-0.1
+0.3
-0.1
+0.2
-0.1
stress
copper (II) chloride 1 mM
+0.1
+0.2
-0.0
+0.2
-0.2
stress
Cisplatin 0.001 mg/ml
+0.0
+0.2
+0.4
-0.3
-0.1
nitrogen source
Cytosine (N)
-0.0
+0.1
-0.4
+0.5
+0.2
stress
Chlorite 0.1 mM
+0.1
+0.0
-0.3
+0.4
+0.1
stress
copper (II) chloride 1 mM
+0.3
+0.4
-0.1
-0.1
-0.0
nitrogen source
L-Leucine (N)
-0.0
-0.3
+0.2
+0.3
+0.2
stress
Sisomicin 0.004 mg/ml
+0.0
+0.3
-0.2
+0.1
+0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.1
+0.1
-0.3
+0.7
-0.1
stress
Paraquat dichloride 0.05 mg/ml
-0.2
+0.2
+0.3
+0.3
-0.2
nitrogen source
L-Serine (N)
+0.0
+0.3
+0.1
+0.3
+0.2
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