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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc04121 and SMc04120 are separated by 110 nucleotides
SMc04120 and SMc04119 overlap by 4 nucleotides
SMc04119 and SMc04118 are separated by 220 nucleotides
SMc04118 and SMc04117 are separated by 7 nucleotides
SMc04121: SMc04121 - uracil phosphoribosyltransferase, at 154,131 to 154,760
SMc04121
SMc04120: SMc04120 - adenosine deaminase, at 154,871 to 155,845
SMc04120
SMc04119: SMc04119 - phosphopentomutase, at 155,842 to 157,062
SMc04119
SMc04118: SMc04118 - hypothetical protein, at 157,283 to 157,867
SMc04118
SMc04117: SMc04117 - hypothetical protein, at 157,875 to 158,489
SMc04117
Group
Condition
SMc04121
SMc04120
SMc04119
SMc04118
SMc04117
stress
Paraquat dichloride 0.3 mg/ml
-4.0
-0.2
-0.4
-0.0
-0.3
stress
nitrite 20 mM
-5.0
-0.0
-0.0
+0.3
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-3.6
+0.0
+0.3
-0.5
+0.2
nitrogen source
L-Histidine (N)
-2.0
+0.3
-0.3
-0.4
-0.4
nitrogen source
nitrate (N)
-1.3
+0.2
-0.2
-1.1
-0.1
lb
LB
-2.3
-0.1
+0.2
+0.2
-0.1
lb
LB
-1.9
+0.1
+0.1
-0.0
-0.2
stress
perchlorate 10 mM
-0.9
+0.0
-0.4
-0.2
-0.4
lb
LB
-1.8
+0.1
-0.1
+0.0
-0.1
stress
Aluminum chloride
-0.7
-0.3
+0.1
-0.4
-0.6
stress
Thallium(I) acetate 0.001 mg/ml
-1.8
+0.0
-0.1
-0.1
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.6
+0.1
+0.1
+0.0
-0.3
lb
LB
-1.8
+0.4
+0.0
-0.0
-0.2
nitrogen source
L-Asparagine (N)
-0.6
+0.1
+0.1
-0.4
-0.6
stress
Nickel (II) chloride 1 mM
-1.3
+0.3
-0.3
+0.1
-0.3
pH
LB, pH8
-2.0
+0.1
+0.1
-0.0
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
-0.4
-0.5
-0.5
+0.3
nitrogen source
L-Glutamine (N)
-0.9
-0.4
+0.3
-0.6
+0.1
nitrogen source
Cytosine (N)
+0.3
-0.5
-0.1
-0.5
-0.6
r2a control
R2A control for volatile experiments
-1.5
+0.0
-0.0
+0.4
-0.0
stress
Paraquat dichloride 0.2 mg/ml
-1.5
-0.3
+0.1
+0.5
+0.2
stress
D-Cycloserine 0.05 mg/ml
-1.1
+0.2
+0.0
+0.3
-0.4
stress
Polymyxin B sulfate 0.00005 mg/ml
-1.7
+0.1
+0.8
-0.4
+0.3
pH
LB, pH8
-1.6
+0.1
+0.3
+0.5
+0.0
stress
copper (II) chloride 1 mM
-0.7
+0.4
+0.2
-0.0
-0.5
carbon source
acetate (C)
-1.0
+0.3
+0.2
-0.2
+0.2
stress
Thallium(I) acetate 0.0025 mg/ml
-0.9
+0.2
+0.2
-0.3
+0.4
carbon source
D-Mannitol (C)
-1.1
+0.1
+0.2
+0.4
+0.1
pH
LB, pH6
+0.9
+0.4
-0.1
-0.4
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+1.1
+0.2
+0.4
+0.3
-0.3
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