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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc04092 and SMc04093 are separated by 244 nucleotides
SMc04093 and SMc04094 are separated by 277 nucleotides
SMc04094 and SMc04095 are separated by 275 nucleotides
SMc04095 and SMc02812 are separated by 112 nucleotides
SMc04092: SMc04092 - hypothetical protein, at 3,634,254 to 3,634,508
SMc04092
SMc04093: SMc04093 - acetyl-CoA synthetase, at 3,634,753 to 3,636,702
SMc04093
SMc04094: SMc04094 - hypothetical protein, at 3,636,980 to 3,637,678
SMc04094
SMc04095: SMc04095 - acyl-COA synthetase, at 3,637,954 to 3,639,861
SMc04095
SMc02812: SMc02812 - hypothetical protein, at 3,639,974 to 3,640,633
SMc02812
Group
Condition
SMc04092
SMc04093
SMc04094
SMc04095
SMc02812
carbon source
acetate (C)
-1.7
-5.1
-0.0
-0.2
-0.8
carbon source
acetate (C)
-1.0
-4.8
+0.1
-0.2
-0.6
carbon source
L-Proline (C)
-0.7
-1.5
+0.4
-0.2
-3.3
carbon source
L-Glutamine (C)
+0.2
-2.1
+0.3
-0.2
-2.2
carbon source
5-Aminovaleric (C)
-0.4
-0.6
-0.6
-0.0
-2.4
carbon source
L-Histidine (C)
+0.0
-2.2
+0.2
-0.2
-1.1
carbon source
pipercolic (C)
-0.2
-1.3
+0.4
+0.1
-2.2
nitrogen source
L-Glutamine (N)
-0.3
+0.2
+0.9
-0.3
-2.7
carbon source
Maltitol (C)
+0.4
+0.1
+0.5
-0.1
-2.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.7
+0.1
+2.1
-0.1
-2.2
nitrogen source
nitrate (N)
+0.9
-0.0
+1.5
-0.3
-1.7
nitrogen source
L-Asparagine (N)
+0.1
+0.0
+2.0
-0.3
-1.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
-0.1
+1.8
-0.0
-1.4
stress
Paraquat dichloride 0.2 mg/ml
-0.5
+0.2
+2.4
-0.1
-1.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
+0.3
+2.2
-0.1
-1.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.5
+0.3
+1.4
+0.0
-1.4
stress
Thallium(I) acetate 0.001 mg/ml
-0.3
+0.2
+2.4
-0.1
-0.5
stress
D-Cycloserine 0.05 mg/ml
-0.0
+0.4
+3.6
-0.3
-1.8
lb
LB
-0.5
+0.1
+3.7
-0.2
-0.3
stress
Nickel (II) chloride 1 mM
+1.7
+0.1
+1.8
+0.0
-0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.7
+0.2
+1.7
-0.0
-0.1
lb
LB
-0.4
+0.1
+4.0
-0.4
+0.2
stress
Paraquat dichloride 0.05 mg/ml
+0.9
+0.1
+3.2
-0.1
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+0.3
+3.3
-0.0
-0.1
pH
LB, pH8
+1.0
+0.4
+2.2
-0.2
+0.6
stress
Cisplatin 0.0005 mg/ml
+0.5
+0.1
+2.8
-0.1
+0.7
stress
perchlorate 10 mM
+0.5
+0.1
+4.6
-0.2
+0.0
lb
LB
+0.7
+0.1
+4.4
-0.3
+0.4
pH
LB, pH6
+0.5
+0.1
+6.2
-0.3
-0.3
pH
LB, pH6
+0.1
+0.2
+6.7
-0.1
-0.1
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