Fitness for 5 genes in Sinorhizobium meliloti 1021

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500 ntSMc03887 and SMc03888 are separated by 9 nucleotidesSMc03888 and SMc03889 are separated by 169 nucleotidesSMc03889 and SMc03890 are separated by 118 nucleotidesSMc03890 and SMc03891 are separated by 270 nucleotides SMc03887: SMc03887 - amino acid efflux protein, at 3,554,360 to 3,555,007 SMc03887 SMc03888: SMc03888 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 3,555,017 to 3,556,270 SMc03888 SMc03889: SMc03889 - transporter, at 3,556,440 to 3,557,579 SMc03889 SMc03890: SMc03890 - transcriptional regulator, at 3,557,698 to 3,558,480 SMc03890 SMc03891: SMc03891 - amino acid-binding periplasmic ABC transporter protein, at 3,558,751 to 3,559,524 SMc03891
Group Condition SMc03887 SMc03888 SMc03889 SMc03890 SMc03891
carbon source NAG (C) -2.0 N.D. -0.6 +0.0 -0.2
stress 3-octanone 0.456 mM -0.2 N.D. +0.2 -2.1 +0.1
carbon source D-Sorbitol (C) -0.3 N.D. -0.8 -0.5 -0.2
pH LB, pH8 -0.1 N.D. -1.3 -0.4 +0.1
carbon source D-Mannose (C) -0.1 N.D. -0.9 -0.1 -0.3
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -0.1 N.D. -0.5 -0.3 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 N.D. -1.9 -0.1 +0.2
nitrogen source L-Asparagine (N) -0.8 N.D. -0.4 -0.2 +0.1
r2a control R2A control for volatile experiments +0.0 N.D. -0.3 -1.2 +0.1
stress Aluminum chloride -0.9 N.D. -0.8 +0.3 +0.1
nitrogen source Cytosine (N) -0.0 N.D. -0.7 -0.6 +0.2
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -0.4 N.D. -0.4 -0.4 +0.2
stress Nickel (II) chloride 1 mM -0.4 N.D. -0.6 +0.7 -0.6
stress 6-Pentyl-2H-pyran-2-one 0.385649 mM +0.4 N.D. +0.0 -1.3 -0.1
carbon source D-Ribose (C) -0.3 N.D. +0.4 -0.8 -0.3
stress 6-Pentyl-2H-pyran-2-one 0.4177863333 mM +0.1 N.D. +0.3 -0.9 -0.2
stress Chlorite 0.1 mM -0.1 N.D. -1.6 +0.7 +0.3
carbon source D-Mannose (C) -0.0 N.D. +0.7 -1.2 -0.1
carbon source D-Trehalose (C) -0.1 N.D. -0.8 +0.4 +0.0
lb LB -0.2 N.D. -1.2 +0.5 +0.3
stress copper (II) chloride 1 mM -0.8 N.D. +0.6 +0.2 -0.2
stress 3-octanone 0.456 mM +0.0 N.D. +0.5 -0.8 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 N.D. -0.5 +0.2 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 N.D. -1.1 +1.0 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 N.D. +1.0 -1.2 +0.4
stress Polymyxin B sulfate 0.00005 mg/ml -0.2 N.D. -0.5 +0.4 +0.5
stress perchlorate 10 mM -0.1 N.D. -0.4 +0.7 +0.2
carbon source D-Ribose (C) +0.1 N.D. +0.9 -0.3 -0.1
nitrogen source L-Leucine (N) +0.1 N.D. +0.4 +1.0 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 N.D. +0.4 +0.3 +0.5
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