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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc03887 and SMc03888 are separated by 9 nucleotides
SMc03888 and SMc03889 are separated by 169 nucleotides
SMc03889 and SMc03890 are separated by 118 nucleotides
SMc03890 and SMc03891 are separated by 270 nucleotides
SMc03887: SMc03887 - amino acid efflux protein, at 3,554,360 to 3,555,007
SMc03887
SMc03888: SMc03888 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 3,555,017 to 3,556,270
SMc03888
SMc03889: SMc03889 - transporter, at 3,556,440 to 3,557,579
SMc03889
SMc03890: SMc03890 - transcriptional regulator, at 3,557,698 to 3,558,480
SMc03890
SMc03891: SMc03891 - amino acid-binding periplasmic ABC transporter protein, at 3,558,751 to 3,559,524
SMc03891
Group
Condition
SMc03887
SMc03888
SMc03889
SMc03890
SMc03891
carbon source
NAG (C)
-2.0
N.D.
-0.6
+0.0
-0.2
stress
3-octanone 0.456 mM
-0.2
N.D.
+0.2
-2.1
+0.1
carbon source
D-Sorbitol (C)
-0.3
N.D.
-0.8
-0.5
-0.2
pH
LB, pH8
-0.1
N.D.
-1.3
-0.4
+0.1
carbon source
D-Mannose (C)
-0.1
N.D.
-0.9
-0.1
-0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.1
N.D.
-0.5
-0.3
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
N.D.
-1.9
-0.1
+0.2
nitrogen source
L-Asparagine (N)
-0.8
N.D.
-0.4
-0.2
+0.1
r2a control
R2A control for volatile experiments
+0.0
N.D.
-0.3
-1.2
+0.1
stress
Aluminum chloride
-0.9
N.D.
-0.8
+0.3
+0.1
nitrogen source
Cytosine (N)
-0.0
N.D.
-0.7
-0.6
+0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.4
N.D.
-0.4
-0.4
+0.2
stress
Nickel (II) chloride 1 mM
-0.4
N.D.
-0.6
+0.7
-0.6
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.4
N.D.
+0.0
-1.3
-0.1
carbon source
D-Ribose (C)
-0.3
N.D.
+0.4
-0.8
-0.3
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
+0.1
N.D.
+0.3
-0.9
-0.2
stress
Chlorite 0.1 mM
-0.1
N.D.
-1.6
+0.7
+0.3
carbon source
D-Mannose (C)
-0.0
N.D.
+0.7
-1.2
-0.1
carbon source
D-Trehalose (C)
-0.1
N.D.
-0.8
+0.4
+0.0
lb
LB
-0.2
N.D.
-1.2
+0.5
+0.3
stress
copper (II) chloride 1 mM
-0.8
N.D.
+0.6
+0.2
-0.2
stress
3-octanone 0.456 mM
+0.0
N.D.
+0.5
-0.8
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
N.D.
-0.5
+0.2
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
N.D.
-1.1
+1.0
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
N.D.
+1.0
-1.2
+0.4
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.2
N.D.
-0.5
+0.4
+0.5
stress
perchlorate 10 mM
-0.1
N.D.
-0.4
+0.7
+0.2
carbon source
D-Ribose (C)
+0.1
N.D.
+0.9
-0.3
-0.1
nitrogen source
L-Leucine (N)
+0.1
N.D.
+0.4
+1.0
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
N.D.
+0.4
+0.3
+0.5
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