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Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc03866 and SMc03867 are separated by 4 nucleotides
SMc03867 and SMc03868 are separated by 77 nucleotides
SMc03868 and SMc03869 are separated by 268 nucleotides
SMc03869 and SMc03870 are separated by 31 nucleotides
SMc03866: SMc03866 - ABC transporter ATP-binding protein, at 3,529,672 to 3,531,513
SMc03866
SMc03867: SMc03867 - hypothetical protein, at 3,531,518 to 3,532,168
SMc03867
SMc03868: SMc03868 - hypothetical protein, at 3,532,246 to 3,532,758
SMc03868
SMc03869: SMc03869 - thiamine transporter substrate binding subunit, at 3,533,027 to 3,534,055
SMc03869
SMc03870: SMc03870 - thiamine transporter membrane protein, at 3,534,087 to 3,535,694
SMc03870
Group
Condition
SMc03866
SMc03867
SMc03868
SMc03869
SMc03870
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.7
N.D.
-0.5
-0.5
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
N.D.
-0.5
-0.5
-0.3
stress
Nickel (II) chloride 1 mM
-0.7
N.D.
-0.4
-0.3
-0.3
lb
LB
-0.3
N.D.
-0.8
-0.2
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
N.D.
-1.1
-0.1
-0.4
pH
LB, pH8
-0.3
N.D.
-0.6
-0.3
-0.2
stress
Thallium(I) acetate 0.0025 mg/ml
+0.0
N.D.
-0.4
-0.4
-0.7
stress
Fusidic 0.0001 mg/ml
-0.5
N.D.
-0.3
-0.2
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
N.D.
-0.6
-0.2
-0.2
stress
A22 0.02 mg/ml
-0.1
N.D.
-0.6
-0.1
-0.4
temperature
LB, 23C
-0.4
N.D.
-0.3
-0.1
-0.3
lb
LB
+0.0
N.D.
-0.4
-0.3
-0.5
nutrient
L-Histidine
-0.3
N.D.
-0.3
-0.1
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
N.D.
-0.1
-0.2
-0.3
stress
D-Cycloserine 0.05 mg/ml
-0.3
N.D.
-0.3
-0.2
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
N.D.
-0.4
-0.1
-0.1
pH
LB, pH6
-0.2
N.D.
-0.5
-0.1
-0.3
pH
LB, pH7
-0.4
N.D.
-0.3
+0.0
-0.3
stress
perchlorate 10 mM
-0.3
N.D.
-0.2
-0.2
-0.3
temperature
LB, 30C
-0.2
N.D.
-0.4
-0.2
-0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.4
N.D.
-0.5
+0.1
-0.2
carbon source
D-Glucosamine Hydrochloride (C)
+0.2
N.D.
-0.9
+0.3
-0.2
carbon source
acetate (C)
-0.2
N.D.
+0.3
-0.3
-0.3
nitrogen source
nitrate (N)
-0.3
N.D.
-0.2
+0.4
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.4
N.D.
-0.2
+0.1
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.7
N.D.
+0.6
+0.2
-0.1
nitrogen source
L-Asparagine (N)
+0.4
N.D.
+0.4
-0.2
-0.2
nitrogen source
L-Serine (N)
+0.3
N.D.
+0.7
+0.1
-0.2
nitrogen source
L-Glutamine (N)
+0.3
N.D.
+0.7
-0.2
+0.1
r2a control
R2A control for volatile experiments
-0.0
N.D.
+0.8
+0.2
+0.3
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