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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc03838 and SMc03839 are separated by 246 nucleotides
SMc03839 and SMc03840 are separated by 125 nucleotides
SMc03840 and SMc03841 are separated by 17 nucleotides
SMc03841 and SMc03842 are separated by 44 nucleotides
SMc03838: SMc03838 - hypothetical protein, at 3,503,288 to 3,505,879
SMc03838
SMc03839: SMc03839 - hypothetical protein, at 3,506,126 to 3,506,863
SMc03839
SMc03840: SMc03840 - acetyltransferase (antibiotic resistance) protein, at 3,506,989 to 3,507,546
SMc03840
SMc03841: SMc03841 - ATP-dependent Clp protease proteolytic subunit, at 3,507,564 to 3,508,181
SMc03841
SMc03842: SMc03842 - hypothetical protein, at 3,508,226 to 3,508,585
SMc03842
Group
Condition
SMc03838
SMc03839
SMc03840
SMc03841
SMc03842
nitrogen source
L-Arginine (N)
-0.6
-4.3
-0.3
-0.2
-1.6
pH
LB, pH8
-0.0
-4.5
-0.1
-0.2
+0.1
pH
LB, pH8
-0.1
-4.5
+0.0
-0.1
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.2
-3.2
+0.1
-0.0
-0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.0
-3.0
-0.2
-0.2
-0.1
r2a control
R2A control for volatile experiments
-0.3
-2.5
+0.3
-0.0
-0.7
stress
copper (II) chloride 1 mM
-0.4
-3.2
+0.3
-0.0
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-2.4
-0.1
-0.3
+0.2
lb
LB
-0.1
-2.9
+0.0
-0.1
+0.3
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.1
-2.8
+0.0
-0.0
+0.3
stress
Sisomicin 0.004 mg/ml
+0.0
-2.1
-0.1
+0.3
-0.5
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.4
-3.1
+0.2
+0.3
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-1.5
+0.3
-0.1
-0.9
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-1.5
-0.5
-0.4
+0.5
nitrogen source
nitrate (N)
-0.3
-1.1
-0.3
-0.0
-0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.2
-1.6
+0.4
-0.0
-0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
-1.4
+0.1
-0.1
-0.3
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.2
-1.5
-0.1
-0.0
+0.4
carbon source
D-Xylose (C)
+0.1
-1.4
-0.1
-0.0
+0.3
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.2
-1.2
+0.2
-0.1
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-1.7
+0.7
-0.0
+0.2
carbon source
methyl-beta-D-xylopyranoside (C)
-0.1
-1.4
+0.1
+0.0
+0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-1.1
-0.1
+0.0
+1.0
stress
D-Cycloserine 0.05 mg/ml
-0.1
+1.0
-0.2
-0.3
-0.7
nutrient
L-Lysine
+0.1
+0.9
-0.2
-0.0
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.0
+1.2
-0.4
-0.2
+0.4
stress
nitrate 40 mM
-0.3
+0.6
+0.0
-0.1
+0.9
nutrient
L-Histidine
+0.1
+1.3
-0.4
+0.2
+0.1
carbon source
Lactitol (C)
+0.1
+1.7
+0.1
-0.1
-0.3
stress
copper (II) chloride 1 mM
-0.2
+1.1
+0.5
-0.1
+0.5
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