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Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc03837 and SMc03838 overlap by 4 nucleotides
SMc03838 and SMc03839 are separated by 246 nucleotides
SMc03839 and SMc03840 are separated by 125 nucleotides
SMc03840 and SMc03841 are separated by 17 nucleotides
SMc03837: SMc03837 - ABC transporter ATP-binding protein, at 3,502,572 to 3,503,291
SMc03837
SMc03838: SMc03838 - hypothetical protein, at 3,503,288 to 3,505,879
SMc03838
SMc03839: SMc03839 - hypothetical protein, at 3,506,126 to 3,506,863
SMc03839
SMc03840: SMc03840 - acetyltransferase (antibiotic resistance) protein, at 3,506,989 to 3,507,546
SMc03840
SMc03841: SMc03841 - ATP-dependent Clp protease proteolytic subunit, at 3,507,564 to 3,508,181
SMc03841
Group
Condition
SMc03837
SMc03838
SMc03839
SMc03840
SMc03841
nitrogen source
L-Arginine (N)
-0.8
-0.6
-4.3
-0.3
-0.2
pH
LB, pH8
+0.2
-0.0
-4.5
-0.1
-0.2
pH
LB, pH8
+0.2
-0.1
-4.5
+0.0
-0.1
stress
copper (II) chloride 1 mM
-0.8
-0.4
-3.2
+0.3
-0.0
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.3
+0.0
-3.0
-0.2
-0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.7
-0.4
-3.1
+0.2
+0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.2
-0.2
-3.2
+0.1
-0.0
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.0
-0.1
-2.8
+0.0
-0.0
lb
LB
+0.2
-0.1
-2.9
+0.0
-0.1
r2a control
R2A control for volatile experiments
-0.0
-0.3
-2.5
+0.3
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
-0.3
-2.4
-0.1
-0.3
nitrogen source
nitrate (N)
-0.5
-0.3
-1.1
-0.3
-0.0
stress
Sisomicin 0.004 mg/ml
-0.2
+0.0
-2.1
-0.1
+0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.4
-0.1
-1.3
+0.1
-0.2
r2a control
R2A control for volatile experiments
-0.7
-0.2
-0.9
-0.0
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.4
+0.1
-1.4
+0.1
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.1
-0.2
-1.5
-0.5
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.2
-1.7
+0.7
-0.0
stress
sodium fluoride 100 mM
+0.4
-0.1
-1.5
-0.0
-0.2
stress
nitrate 40 mM
-1.5
-0.3
+0.6
+0.0
-0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.2
-0.2
-1.6
+0.4
-0.0
carbon source
D-Xylose (C)
+0.4
+0.1
-1.4
-0.1
-0.0
nitrogen source
Gly-DL-Asp (N)
+0.6
+0.1
-1.2
-0.2
-0.1
nitrogen source
L-Leucine (N)
-1.2
+0.3
+0.4
+0.1
-0.1
carbon source
D-Glucose (C)
+0.8
+0.3
-0.9
+0.0
-0.2
stress
Chlorite 0.1 mM
-0.8
-0.2
+0.7
+0.2
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.3
-0.0
+1.2
-0.4
-0.2
nutrient
L-Histidine
-0.3
+0.1
+1.3
-0.4
+0.2
lb
LB
+0.8
+0.0
+1.1
-0.1
-0.1
carbon source
Lactitol (C)
+0.5
+0.1
+1.7
+0.1
-0.1
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