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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc03258 and SMc03259 are separated by 168 nucleotides
SMc03259 and SMc03260 are separated by 601 nucleotides
SMc03260 and SMc03262 are separated by 524 nucleotides
SMc03262 and SMc03263 are separated by 1066 nucleotides
SMc03258: SMc03258 - transcriptional regulator, at 3,373,376 to 3,374,068
SMc03258
SMc03259: SMc03259 - hypothetical protein, at 3,374,237 to 3,375,145
SMc03259
SMc03260: SMc03260 - transposase, at 3,375,747 to 3,377,081
SMc03260
SMc03262: SMc03262 - hypothetical protein, at 3,377,606 to 3,377,863
SMc03262
SMc03263: SMc03263 - hypothetical protein, at 3,378,930 to 3,379,202
SMc03263
Group
Condition
SMc03258
SMc03259
SMc03260
SMc03262
SMc03263
carbon source
L-Glutamine (C)
-1.4
-0.2
N.D.
-0.1
N.D.
carbon source
L-Histidine (C)
-1.7
+0.1
N.D.
-0.2
N.D.
carbon source
Lactitol (C)
-1.7
-0.1
N.D.
+0.1
N.D.
carbon source
Lactitol (C)
-1.6
+0.1
N.D.
-0.1
N.D.
nitrogen source
L-Asparagine (N)
-0.8
-0.0
N.D.
-0.7
N.D.
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.7
-0.3
N.D.
-0.4
N.D.
carbon source
L-Alanine (C)
-1.0
-0.1
N.D.
-0.2
N.D.
carbon source
D-Maltose (C)
-1.2
-0.0
N.D.
+0.0
N.D.
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.6
-0.3
N.D.
-0.3
N.D.
carbon source
D-Glucosamine Hydrochloride (C)
-0.9
+0.0
N.D.
-0.3
N.D.
carbon source
D-Glucose (C)
-1.1
+0.1
N.D.
-0.2
N.D.
carbon source
Uridine (C)
-0.9
-0.0
N.D.
-0.2
N.D.
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.9
+0.1
N.D.
-0.3
N.D.
carbon source
Beta-Lactose (C)
-1.2
-0.0
N.D.
+0.1
N.D.
nutrient
L-Histidine
-0.7
-0.1
N.D.
-0.3
N.D.
carbon source
D,L-Lactate (C)
-0.9
-0.1
N.D.
-0.1
N.D.
carbon source
L-Alanine (C)
-0.9
+0.1
N.D.
-0.2
N.D.
carbon source
L-Lysine (C)
-0.8
+0.1
N.D.
-0.3
N.D.
carbon source
L-Lysine (C)
-1.0
+0.1
N.D.
+0.0
N.D.
carbon source
5-Aminovaleric (C)
-0.9
+0.1
N.D.
-0.1
N.D.
carbon source
pipercolic (C)
-1.0
+0.1
N.D.
+0.0
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.0
+0.2
N.D.
-0.1
N.D.
carbon source
D-Trehalose (C)
-1.1
+0.1
N.D.
+0.1
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.1
+0.3
N.D.
+0.0
N.D.
carbon source
D-Glucose (C)
-1.0
+0.1
N.D.
+0.1
N.D.
carbon source
D-Glucose (C)
-0.8
-0.1
N.D.
+0.2
N.D.
carbon source
Lactulose (C)
-0.9
+0.2
N.D.
+0.1
N.D.
nitrogen source
L-Arginine (N)
-1.0
+0.1
N.D.
+0.4
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.8
+0.2
N.D.
+0.7
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
+0.3
N.D.
+0.3
N.D.
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