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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc03247 and SMc03248 are separated by 860 nucleotides
SMc03248 and SMc03249 overlap by 4 nucleotides
SMc03249 and SMc03751 are separated by 76 nucleotides
SMc03751 and SMc03250 overlap by 20 nucleotides
SMc03247: SMc03247 - integrase/recombinase, at 3,360,319 to 3,361,038
SMc03247
SMc03248: SMc03248 - transposase, at 3,361,899 to 3,362,729
SMc03248
SMc03249: SMc03249 - hypothetical protein, at 3,362,726 to 3,362,983
SMc03249
SMc03751: SMc03751 - hypothetical protein, at 3,363,060 to 3,363,509
SMc03751
SMc03250: SMc03250 - hypothetical protein, at 3,363,490 to 3,363,951
SMc03250
Group
Condition
SMc03247
SMc03248
SMc03249
SMc03751
SMc03250
nitrogen source
L-Arginine (N)
-0.4
+0.1
-0.8
-0.3
-3.8
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.4
+0.1
-2.3
+0.3
-0.5
stress
Aluminum chloride
-0.3
+0.0
-0.8
+0.3
-1.1
r2a control
R2A control for volatile experiments
-0.2
-0.1
-0.5
-0.4
-0.6
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.0
-0.7
-0.5
-0.2
-0.2
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.1
-0.1
-0.6
-0.5
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
+0.0
+0.1
+0.5
-1.7
nitrogen source
Gelatin (N)
-0.4
+0.3
-0.6
+0.0
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
+0.2
-0.7
+0.0
-0.5
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.0
-0.1
-1.2
+0.0
+0.2
nitrogen source
L-Glutamine (N)
-0.3
+0.3
+0.1
+0.0
-1.2
stress
copper (II) chloride 1 mM
+0.1
-0.1
+0.5
-0.4
-0.8
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.1
-0.0
-0.6
-0.4
+0.5
stress
Sisomicin 0.004 mg/ml
-0.3
+0.1
+0.2
+0.3
-0.8
stress
Paraquat dichloride 0.2 mg/ml
-0.1
+0.1
-0.1
+0.4
-0.9
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
+0.1
-0.2
+0.5
+0.4
-1.0
stress
Cisplatin 0.001 mg/ml
+0.1
+0.5
-1.5
+0.1
+0.7
carbon source
acetate (C)
-0.1
-0.1
-0.8
+0.7
+0.2
stress
perchlorate 10 mM
-0.2
+0.0
+0.7
+0.0
-0.6
nutrient
Min media with glucose
-0.3
+0.4
+0.2
+0.3
-0.5
nutrient
L-Histidine
-0.5
+0.2
+0.5
+0.3
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
+0.0
-0.5
+0.3
+0.8
nitrogen source
nitrate (N)
-0.1
+0.5
-0.8
+0.2
+0.4
carbon source
5-Aminovaleric (C)
+0.3
+0.0
-0.1
+0.8
-0.4
carbon source
acetate (C)
+0.1
+0.2
+0.1
+0.7
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
+0.2
-0.3
+0.1
+0.9
nutrient
Min media with glucose
-0.1
+0.4
+0.7
+0.4
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.1
+0.7
-0.2
+0.8
stress
Cisplatin 0.0005 mg/ml
-0.1
+0.3
+0.3
+0.3
+0.7
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.3
+0.1
+0.6
+0.1
+0.6
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