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Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc03202 and SMc03203 are separated by 3 nucleotides
SMc03203 and SMc03204 are separated by 6 nucleotides
SMc03204 and SMc03205 are separated by 384 nucleotides
SMc03205 and SMc03206 are separated by 163 nucleotides
SMc03202: SMc03202 - branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4)
(from data)
, at 3,166,130 to 3,167,143
SMc03202
SMc03203: SMc03203 - Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168)
(from data)
, at 3,167,147 to 3,168,427
SMc03203
SMc03204: SMc03204 - Dihydrolipoyl dehydrogenase (EC 1.8.1.4)
(from data)
, at 3,168,434 to 3,169,828
SMc03204
SMc03205: SMc03205 - formyltetrahydrofolate deformylase, at 3,170,213 to 3,171,097
SMc03205
SMc03206: SMc03206 - maleylacetoacetate isomerase (glutathione transferase zeta 1) protein, at 3,171,261 to 3,171,914
SMc03206
Group
Condition
SMc03202
SMc03203
SMc03204
SMc03205
SMc03206
carbon source
L-Leucine (C)
-3.6
-3.8
-2.9
N.D.
-0.1
nitrogen source
L-Leucine (N)
-0.4
-1.1
-0.7
N.D.
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-1.4
-0.5
N.D.
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-0.8
-0.5
N.D.
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
-0.9
-0.8
N.D.
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-0.9
-0.9
N.D.
+0.1
nitrogen source
L-Arginine (N)
-0.1
-1.4
+0.2
N.D.
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
-0.4
-0.3
N.D.
-0.2
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.2
-0.2
-0.6
N.D.
-0.1
stress
Cisplatin 0.0005 mg/ml
-0.1
-0.1
-0.5
N.D.
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.3
-0.7
N.D.
+0.1
carbon source
D-Mannitol (C)
-0.1
-0.4
-0.2
N.D.
-0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
-0.5
-0.2
N.D.
-0.2
stress
copper (II) chloride 1 mM
+0.1
-0.5
-0.3
N.D.
-0.3
stress
D-Cycloserine 0.05 mg/ml
+0.1
-0.2
-0.6
N.D.
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
-0.2
-0.8
N.D.
+0.2
stress
Chloride 200 mM
-0.3
+0.2
-0.5
N.D.
-0.0
carbon source
NAG (C)
+0.0
-0.6
+0.2
N.D.
-0.2
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.0
+0.2
-0.9
N.D.
+0.2
stress
Cisplatin 0.001 mg/ml
-0.1
+0.4
-0.3
N.D.
-0.2
pH
LB, pH7
-0.1
+0.2
-0.5
N.D.
+0.2
nitrogen source
L-Asparagine (N)
+0.3
+0.3
-0.2
N.D.
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
-0.1
+0.3
N.D.
+0.3
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.1
-0.7
+0.8
N.D.
+0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.1
+0.2
-0.4
N.D.
+0.3
nitrogen source
Cytosine (N)
-0.1
+0.6
+0.1
N.D.
-0.4
carbon source
Myristic (C)
+0.2
+0.6
-0.1
N.D.
-0.2
stress
Aluminum chloride
+0.2
-0.4
+0.7
N.D.
+0.1
tsb
Day4 TSB
+0.2
+0.3
+0.3
N.D.
+0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.1
+0.5
+0.6
N.D.
+0.3
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