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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc03122 and SMc03121 are separated by 249 nucleotides
SMc03121 and SMc03120 are separated by 11 nucleotides
SMc03120 and SMc03119 overlap by 4 nucleotides
SMc03119 and SMc03118 are separated by 3 nucleotides
SMc03122: SMc03122 - transcriptional regulator, at 3,214,897 to 3,215,844
SMc03122
SMc03121: SMc03121 - periplasmic binding ABC transporter protein, at 3,216,094 to 3,217,299
SMc03121
SMc03120: SMc03120 - ABC transporter ATP-binding protein, at 3,217,311 to 3,218,099
SMc03120
SMc03119: SMc03119 - ABC transporter ATP-binding protein, at 3,218,096 to 3,218,797
SMc03119
SMc03118: SMc03118 - ABC transporter permease, at 3,218,801 to 3,219,688
SMc03118
Group
Condition
SMc03122
SMc03121
SMc03120
SMc03119
SMc03118
stress
copper (II) chloride 1 mM
-0.1
+0.0
-1.7
-0.1
+0.0
nitrogen source
L-Arginine (N)
-0.3
-0.3
+0.5
-1.4
-0.2
stress
Nickel (II) chloride 1 mM
+0.2
-0.3
-1.7
+0.0
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.5
-0.2
-0.1
-0.3
-0.4
nitrogen source
Uridine (N)
+0.1
-0.1
-0.9
-0.2
-0.3
carbon source
D-Glucose (C)
-0.3
+0.1
-0.6
-0.4
+0.1
nitrogen source
NAG (N)
+0.0
-0.2
-1.2
+0.1
+0.2
carbon source
Beta-Lactose (C)
-0.3
+0.0
-1.0
+0.2
+0.1
nitrogen source
Cytosine (N)
+0.2
-0.2
-1.3
+0.8
-0.2
nutrient
Min media with glucose
+0.1
-0.1
-0.8
+0.3
-0.0
pH
LB, pH6
+0.2
+0.1
-0.5
-0.4
+0.1
stress
Cisplatin 0.0005 mg/ml
+0.1
-0.1
-0.7
+0.1
+0.2
stress
Aluminum chloride
+0.1
-0.3
+0.4
-0.6
-0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.1
-0.2
+0.7
-0.6
-0.2
stress
Chlorite 0.1 mM
+0.3
-0.5
+0.5
-0.2
-0.2
carbon source
D-Glucosamine Hydrochloride (C)
+0.0
-0.2
-0.3
+0.6
-0.1
stress
nitrate 40 mM
-0.5
-0.2
+0.4
+0.1
+0.3
nitrogen source
Gly-DL-Asp (N)
+0.1
+0.0
+0.7
-0.4
-0.3
stress
1-octen-3-ol 0.5427293333 mM
-0.2
+0.1
+0.6
-0.3
-0.1
stress
Thallium(I) acetate 0.0025 mg/ml
+0.2
-0.3
-0.4
+0.5
+0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
+0.1
+0.5
-0.1
-0.3
carbon source
L-Arabinose (C)
+0.4
-0.1
+0.5
-0.3
+0.2
carbon source
Lactitol (C)
+0.2
+0.2
+0.6
-0.3
+0.2
stress
Paraquat dichloride 0.2 mg/ml
+0.0
-0.3
+0.7
+0.5
+0.0
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.1
-0.2
+0.6
+0.7
-0.2
lb
LB
+0.2
-0.2
+0.4
+0.4
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.0
+0.7
+0.8
-0.4
stress
Fusidic 0.0001 mg/ml
+0.2
-0.1
+0.7
+0.3
+0.0
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.4
+0.5
+0.4
-0.1
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.0
+1.3
+0.7
+0.1
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