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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc03026 and SMc03027 are separated by 307 nucleotides
SMc03027 and SMc03028 are separated by 6 nucleotides
SMc03028 and SMc03029 overlap by 1 nucleotides
SMc03029 and SMc03030 are separated by 11 nucleotides
SMc03026: SMc03026 - hypothetical protein, at 724,079 to 724,630
SMc03026
SMc03027: SMc03027 - flagellar basal body rod protein FlgB, at 724,938 to 725,318
SMc03027
SMc03028: SMc03028 - flagellar basal body rod protein FlgC, at 725,325 to 725,744
SMc03028
SMc03029: SMc03029 - flagellar hook-basal body protein FliE, at 725,744 to 726,079
SMc03029
SMc03030: SMc03030 - flagellar basal body rod protein FlgG, at 726,091 to 726,879
SMc03030
Group
Condition
SMc03026
SMc03027
SMc03028
SMc03029
SMc03030
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.1
-0.9
-0.7
N.D.
-1.2
stress
copper (II) chloride 1 mM
-0.3
-1.5
-0.3
N.D.
-0.3
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.1
-0.5
-1.1
N.D.
-0.7
nutrient
L-Lysine
-0.2
-1.0
-0.6
N.D.
+0.1
nutrient
Min media with glucose
-0.0
-0.2
-1.5
N.D.
-0.0
nitrogen source
Gelatin (N)
+0.1
-0.8
-1.3
N.D.
+0.4
carbon source
5-Aminovaleric (C)
+0.2
-0.6
-0.4
N.D.
-0.6
carbon source
5-Aminovaleric (C)
-0.0
+0.2
-1.0
N.D.
-0.5
nitrogen source
L-Arginine (N)
+0.2
-1.0
-0.1
N.D.
-0.4
carbon source
succinate (C)
-0.0
-0.5
+0.2
N.D.
-1.0
carbon source
D-Xylose (C)
+0.1
-0.3
-1.0
N.D.
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
+0.5
-1.5
N.D.
+0.1
carbon source
acetate (C)
-0.3
+0.1
-1.1
N.D.
-0.0
carbon source
L-Arabinose (C)
+0.2
+0.2
-0.4
N.D.
-0.9
nitrogen source
Cytosine (N)
+0.4
+0.0
-1.2
N.D.
-0.2
nitrogen source
L-Glutamine (N)
-0.2
-1.2
+0.2
N.D.
+0.4
lb
LB
+0.2
+0.5
-0.5
N.D.
-0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
+0.1
-0.9
N.D.
+0.5
pH
LB, pH6
-0.1
-0.1
-0.8
N.D.
+0.7
stress
Cisplatin 0.001 mg/ml
-0.3
+0.2
-0.6
N.D.
+0.5
stress
D-Cycloserine 0.05 mg/ml
-0.1
+0.5
-0.7
N.D.
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.2
-0.0
-0.7
N.D.
+0.6
pH
LB, pH6
-0.2
+0.5
-0.6
N.D.
+0.5
r2a control
R2A control for volatile experiments
+0.3
+0.8
-0.8
N.D.
+0.0
stress
Chlorite 0.1 mM
+0.2
+0.1
-0.4
N.D.
+0.9
r2a control
R2A control for volatile experiments
+0.1
+0.6
-0.1
N.D.
+0.7
nitrogen source
L-Asparagine (N)
-0.2
+0.1
+1.2
N.D.
+0.5
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
+0.4
+0.4
N.D.
+0.5
lb
LB
+0.3
-0.4
+1.4
N.D.
+0.3
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
+0.0
+0.5
+0.5
N.D.
+0.6
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