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Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc03006 and SMc03007 are separated by 20 nucleotides
SMc03007 and SMc03008 are separated by 5 nucleotides
SMc03008 and SMc03009 overlap by 4 nucleotides
SMc03009 and SMc03010 overlap by 4 nucleotides
SMc03006: SMc03006 - chemotaxis regulator protein, at 704,096 to 704,461
SMc03006
SMc03007: SMc03007 - chemotaxis protein (sensory transduction histidine kinase), at 704,482 to 706,758
SMc03007
SMc03008: SMc03008 - chemotaxis protein, at 706,764 to 707,231
SMc03008
SMc03009: SMc03009 - chemotaxis protein methyltransferase, at 707,228 to 708,136
SMc03009
SMc03010: SMc03010 - chemotaxis-specific methylesterase, at 708,133 to 709,182
SMc03010
Group
Condition
SMc03006
SMc03007
SMc03008
SMc03009
SMc03010
stress
perchlorate 10 mM
-1.8
+0.1
-1.2
+0.1
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.4
+0.4
-2.5
+0.1
+0.1
nitrogen source
L-Arginine (N)
-0.6
+0.4
-3.8
+0.5
+0.3
stress
3-octanone 5.310333333 mM
-1.8
-0.2
-0.8
-0.1
-0.3
stress
3-octanone 0.456 mM
-1.6
+0.1
-1.1
-0.2
-0.3
r2a control
R2A control for volatile experiments
-1.0
+0.1
-1.3
+0.0
-0.7
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-1.0
-0.4
-0.5
-0.2
-0.5
carbon source
D-Xylose (C)
-2.1
-0.1
-0.1
+0.1
-0.4
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-0.0
+0.1
-1.9
+0.1
-0.1
stress
3-octanone 0.456 mM
-2.5
+0.0
-0.0
+0.1
+0.6
stress
1-octen-3-ol 0.5427293333 mM
-0.9
-0.2
-0.9
+0.2
-0.0
carbon source
L-Alanine (C)
+0.3
-0.2
-1.7
+0.1
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.2
-0.0
-0.9
-0.4
+1.1
stress
Chlorite 0.1 mM
-1.4
-0.5
+0.8
-0.3
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.9
+0.4
-0.7
-0.3
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.8
-0.3
+0.7
+0.2
+0.0
nitrogen source
Cytosine (N)
-2.5
-0.2
+1.1
+0.1
+0.6
stress
Nickel (II) chloride 1 mM
-0.1
-0.1
+0.9
-0.3
-1.4
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.9
+0.1
+0.6
-0.3
-0.3
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-1.3
-0.2
+0.6
+0.0
+0.2
carbon source
Mannobiose (C)
-0.7
-0.0
+0.8
-0.2
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.7
+0.1
-0.7
-0.9
+0.5
stress
Polymyxin B sulfate 0.00005 mg/ml
-1.6
-0.2
+1.1
+0.0
+0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-1.0
-0.1
+0.3
+0.9
+0.0
carbon source
D-Ribose (C)
+0.1
+0.2
+1.0
-0.1
-0.8
carbon source
Xylobiose (C)
-0.4
-0.2
+1.0
+0.3
-0.3
stress
Paraquat dichloride 0.2 mg/ml
-0.8
-0.1
+0.7
-0.1
+0.7
nitrogen source
Gly-DL-Asp (N)
+0.3
+0.1
+1.2
+0.5
-0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+1.0
-0.1
+1.7
-0.0
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
+0.0
+0.6
+0.4
+0.9
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