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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc02854 and SMc02855 are separated by 98 nucleotides
SMc02855 and SMc02856 are separated by 460 nucleotides
SMc02856 and SMc02857 are separated by 216 nucleotides
SMc02857 and SMc02858 are separated by 274 nucleotides
SMc02854: SMc02854 - signal peptide protein, at 205,270 to 205,761
SMc02854
SMc02855: SMc02855 - hypothetical protein, at 205,860 to 206,783
SMc02855
SMc02856: SMc02856 - penicillin-binding protein, at 207,244 to 209,547
SMc02856
SMc02857: SMc02857 - molecular chaperone DnaK, at 209,764 to 211,689
SMc02857
SMc02858: SMc02858 - chaperone protein DnaJ, at 211,964 to 213,103
SMc02858
Group
Condition
SMc02854
SMc02855
SMc02856
SMc02857
SMc02858
nitrogen source
L-Arginine (N)
-0.1
-0.2
-2.0
N.D.
-4.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.9
-0.2
-2.7
N.D.
-2.9
lb
LB
+0.1
+0.0
-1.3
N.D.
-3.5
nitrogen source
L-Asparagine (N)
-0.7
-0.2
-1.5
N.D.
-2.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.3
-0.2
-2.9
N.D.
-2.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
-0.2
-1.8
N.D.
-2.9
nitrogen source
Gelatin (N)
+0.0
-0.2
-1.0
N.D.
-3.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.1
-0.2
-2.3
N.D.
-2.8
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.3
-0.5
-0.9
N.D.
-3.0
nitrogen source
L-Glutamine (N)
-0.3
-0.1
-1.8
N.D.
-2.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.8
-0.0
-2.0
N.D.
-2.9
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
-0.1
-1.3
N.D.
-2.8
pH
LB, pH7
+0.3
-0.0
-1.6
N.D.
-2.6
stress
copper (II) chloride 1 mM
+0.3
-0.0
-1.8
N.D.
-2.5
carbon source
L-Lysine (C)
+0.0
-0.1
-2.2
N.D.
-1.7
lb
LB
+0.5
+0.0
-1.9
N.D.
-2.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.3
-0.9
N.D.
-2.7
pH
LB, pH6
+0.1
-0.1
-1.9
N.D.
-1.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.0
-0.0
-1.5
N.D.
-2.9
stress
Aluminum chloride
+0.2
-0.2
-0.2
N.D.
-3.1
carbon source
Glycerol (C)
+0.2
-0.2
-0.6
N.D.
-2.4
stress
nitrate 40 mM
+1.1
+0.2
-2.3
N.D.
-1.0
stress
Chloride 200 mM
+0.8
-0.0
-2.7
N.D.
-0.1
stress
Cobalt chloride 0.16 mM
-0.4
-0.2
-1.6
N.D.
+1.8
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
+0.1
-2.4
N.D.
+1.4
stress
Cisplatin 0.0005 mg/ml
+1.0
-0.0
-2.1
N.D.
+0.9
pH
LB, pH8
+0.3
-0.3
-1.4
N.D.
+1.5
stress
Cisplatin 0.001 mg/ml
+1.3
-0.0
-1.8
N.D.
+1.3
pH
LB, pH8
+0.5
-0.2
-1.5
N.D.
+2.4
stress
Nickel (II) chloride 1 mM
+0.4
-0.5
-1.3
N.D.
+3.4
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