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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc02684 and SMc02685 are separated by 147 nucleotides
SMc02685 and SMc02686 are separated by 284 nucleotides
SMc02686 and SMc02687 are separated by 40 nucleotides
SMc02687 and SMc02688 are separated by 73 nucleotides
SMc02684: SMc02684 - hydrolase/peptidase, at 2,533,035 to 2,534,186
SMc02684
SMc02685: SMc02685 - hypothetical protein, at 2,534,334 to 2,535,212
SMc02685
SMc02686: SMc02686 - ribose-phosphate pyrophosphokinase, at 2,535,497 to 2,536,429
SMc02686
SMc02687: SMc02687 - hypothetical protein, at 2,536,470 to 2,537,300
SMc02687
SMc02688: SMc02688 - hypothetical protein, at 2,537,374 to 2,537,751
SMc02688
Group
Condition
SMc02684
SMc02685
SMc02686
SMc02687
SMc02688
nitrogen source
Cytosine (N)
+0.3
-2.3
N.D.
-1.2
+0.1
nutrient
L-Lysine
+0.1
-2.3
N.D.
-0.1
-0.1
nutrient
Min media with glucose
+0.2
-2.4
N.D.
+0.0
-0.2
nitrogen source
L-Histidine (N)
+0.4
-1.9
N.D.
-0.8
+0.0
pH
LB, pH8
+1.8
-3.6
N.D.
-0.4
-0.1
nutrient
Min media with glucose
-0.0
-2.3
N.D.
+0.0
-0.0
carbon source
pipercolic (C)
-0.9
-1.3
N.D.
+0.3
-0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.5
-2.3
N.D.
-0.3
+0.0
nutrient
L-Histidine
+0.1
-1.8
N.D.
-0.2
-0.1
nutrient
L-Lysine
+0.1
-2.4
N.D.
+0.3
+0.0
carbon source
succinate (C)
+0.0
-1.9
N.D.
+0.0
+0.0
carbon source
D-Trehalose (C)
+0.1
-1.8
N.D.
-0.0
-0.0
nitrogen source
L-Asparagine (N)
+0.4
-1.9
N.D.
+0.1
-0.4
carbon source
L-Lysine (C)
-0.1
-2.0
N.D.
+0.3
+0.1
carbon source
D-Fructose (C)
+0.2
-1.4
N.D.
-0.2
+0.1
nitrogen source
L-Arginine (N)
+0.6
-0.6
N.D.
-1.1
-0.1
nitrogen source
L-Serine (N)
+0.5
-1.2
N.D.
-0.3
+0.1
nitrogen source
Gly-DL-Asp (N)
+0.7
-0.8
N.D.
-0.6
+0.0
stress
Polymyxin B sulfate 0.00005 mg/ml
+1.2
-2.3
N.D.
+0.1
+0.4
stress
Aluminum chloride
+0.5
-1.3
N.D.
+0.1
+0.1
lb
LB
+0.9
-1.2
N.D.
-0.3
+0.0
stress
perchlorate 10 mM
+1.0
-0.5
N.D.
-0.6
-0.3
stress
Chloride 200 mM
+1.0
-1.2
N.D.
-0.0
-0.1
pH
LB, pH8
+1.7
-1.7
N.D.
-0.2
+0.1
stress
D-Cycloserine 0.05 mg/ml
+0.8
-1.2
N.D.
+0.2
-0.0
stress
Cobalt chloride 0.16 mM
+1.2
-1.1
N.D.
+0.0
+0.1
stress
Fusidic 0.0001 mg/ml
+1.1
-0.8
N.D.
-0.4
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.1
-0.9
N.D.
+0.4
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.2
-0.5
N.D.
+0.2
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.6
+0.6
N.D.
+0.5
-0.1
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