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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc02642 and SMc02641 are separated by 85 nucleotides
SMc02641 and SMc02640 are separated by 146 nucleotides
SMc02640 and SMc02639 are separated by 71 nucleotides
SMc02639 and SMc02638 are separated by 51 nucleotides
SMc02642: SMc02642 - signal peptide protein, at 1,179,230 to 1,179,544
SMc02642
SMc02641: SMc02641 - UDP-glucose 6-dehydrogenase, at 1,179,630 to 1,180,943
SMc02641
SMc02640: SMc02640 - UDP-glucuronic acid epimerase, at 1,181,090 to 1,182,115
SMc02640
SMc02639: SMc02639 - transcriptional regulator, at 1,182,187 to 1,182,519
SMc02639
SMc02638: SMc02638 - hypothetical protein, at 1,182,571 to 1,183,053
SMc02638
Group
Condition
SMc02642
SMc02641
SMc02640
SMc02639
SMc02638
stress
A22 0.02 mg/ml
-0.2
-7.1
-5.6
+0.1
+0.1
stress
Fusidic 0.0001 mg/ml
+0.1
-7.1
-4.4
-0.4
+0.1
pH
LB, pH8
-0.2
-5.3
-3.6
-1.8
+0.3
pH
LB, pH8
-0.3
-4.5
-3.9
-1.2
-0.3
stress
copper (II) chloride 1 mM
+0.0
-6.4
-4.9
+1.4
-0.1
stress
Sisomicin 0.004 mg/ml
-0.0
-5.1
-2.7
-0.7
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
-3.6
-3.0
-2.1
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.3
-3.6
-4.2
+0.8
-0.5
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.8
-6.0
-2.6
+0.4
-0.5
stress
Aluminum chloride
+0.3
-4.6
-3.9
+0.1
+0.1
carbon source
Myristic (C)
+0.1
-2.8
-4.2
-0.2
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-4.1
-3.1
+0.2
-0.1
carbon source
Myristic (C)
-0.0
-2.8
-3.9
+0.1
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-2.4
-3.6
+0.1
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
-2.6
-4.0
+0.5
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-3.0
-3.3
-0.0
-0.1
carbon source
D-Glucose (C)
-0.0
-2.3
-4.2
+0.0
+0.1
carbon source
pipercolic (C)
-0.2
-2.3
-4.2
+0.6
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-3.7
-3.1
+0.7
-0.1
carbon source
D-Mannose (C)
-0.0
-2.8
-3.4
-0.0
+0.0
carbon source
D-Ribose (C)
-0.4
-2.3
-3.1
-0.3
+0.1
carbon source
D-Glucose (C)
-0.2
-2.3
-3.5
+0.2
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.7
-3.1
-2.7
+0.5
+0.0
carbon source
D-Mannose (C)
-0.3
-2.3
-3.4
+0.2
-0.1
carbon source
L-Lysine (C)
-0.1
-2.3
-3.0
+0.2
-0.4
stress
Thallium(I) acetate 0.0025 mg/ml
+0.1
-3.1
+1.8
+0.5
-0.4
stress
Cisplatin 0.0005 mg/ml
-0.4
-3.0
+2.5
+0.2
+0.2
stress
Cisplatin 0.001 mg/ml
+0.3
-2.8
+2.4
+0.7
+0.2
pH
LB, pH6
-0.4
+5.3
+5.1
+2.2
+0.2
pH
LB, pH6
-0.1
+5.5
+5.3
+1.7
+0.3
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