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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc02660 and SMc02565 are separated by 173 nucleotides
SMc02565 and SMc02561 overlap by 47 nucleotides
SMc02561 and SMc02559 are separated by 2 nucleotides
SMc02559 and SMc02558 overlap by 4 nucleotides
SMc02660: SMc02660 - toxin-activating lysine-acyltransferase, at 1,201,811 to 1,202,308
SMc02660
SMc02565: SMc02565 - hypothetical protein, at 1,202,482 to 1,203,486
SMc02565
SMc02561: SMc02561 - hypothetical protein, at 1,203,440 to 1,203,973
SMc02561
SMc02559: SMc02559 - hypothetical protein, at 1,203,976 to 1,204,584
SMc02559
SMc02558: SMc02558 - hypothetical protein, at 1,204,581 to 1,205,423
SMc02558
Group
Condition
SMc02660
SMc02565
SMc02561
SMc02559
SMc02558
dmso control
DMSO control
-0.2
-0.1
-3.2
-0.1
-1.7
lb no stress control
LB no stress control
-0.1
-0.6
-2.5
-0.3
-1.1
carbon source
acetate (C)
+0.0
-1.2
-1.6
-0.3
-1.0
lb no stress control
LB no stress control
+0.2
-0.1
-2.1
-0.2
-1.5
dmso control
DMSO control
-0.3
-0.3
-1.6
-0.4
-0.9
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.6
+0.3
-3.0
-0.7
-0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.1
-2.1
-0.0
-1.2
dmso control
DMSO control
-0.3
-0.0
-1.6
-0.0
-1.5
lb no stress control
LB no stress control
-0.1
-0.2
-2.0
-0.2
-0.9
stress
1-octen-3-ol 0.5427293333 mM
+0.1
-0.2
-1.7
-0.4
-1.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.3
-2.6
-0.5
-0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.4
+0.3
-1.4
-0.0
-1.1
nitrogen source
Uridine (N)
+0.3
+0.4
+0.1
+0.3
-3.6
nitrogen source
L-Asparagine (N)
-0.6
+0.5
-1.0
-0.1
-1.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.7
+0.1
-1.6
-0.9
-0.0
stress
Chlorite 0.1 mM
+0.1
+0.9
-1.2
+0.1
+1.4
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.6
+0.5
-0.7
-0.4
+1.7
pH
LB, pH8
+0.2
+0.3
-0.6
+0.2
+3.0
stress
copper (II) chloride 1 mM
-0.1
+1.1
+0.8
+0.2
+1.1
stress
nitrate 40 mM
+0.2
+0.9
+0.9
-0.1
+1.3
pH
LB, pH8
+0.1
+0.3
+0.0
+0.3
+3.0
stress
Nickel (II) chloride 1 mM
+0.3
+1.3
+0.2
+0.4
+1.5
pH
LB, pH6
+0.3
+1.3
+0.9
+0.3
+1.3
stress
Paraquat dichloride 0.05 mg/ml
+0.1
+0.4
-0.3
+0.1
+3.9
pH
LB, pH6
+0.3
+1.1
+1.3
+0.5
+1.5
stress
D-Cycloserine 0.05 mg/ml
-0.1
+0.5
+0.8
+0.3
+3.1
lb
LB
+0.1
+0.7
-0.5
+0.5
+4.4
lb
LB
-0.0
+0.6
+0.8
-0.1
+4.3
lb
LB
-0.3
+0.6
+0.1
+0.0
+5.8
stress
perchlorate 10 mM
-0.1
+1.2
+0.2
+0.2
+4.9
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