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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc02523 and SMc02522 are separated by 157 nucleotides
SMc02522 and SMc02521 are separated by 167 nucleotides
SMc02521 and SMc02520 are separated by 130 nucleotides
SMc02520 and SMc02519 are separated by 38 nucleotides
SMc02523: SMc02523 - transcriptional regulator, at 3,268,382 to 3,269,278
SMc02523
SMc02522: SMc02522 - oxidoreductase, at 3,269,436 to 3,270,206
SMc02522
SMc02521: SMc02521 - glycerol-3-phosphate regulon repressor transcription regulator protein, at 3,270,374 to 3,271,138
SMc02521
SMc02520: SMc02520 - glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)
(from data)
, at 3,271,269 to 3,272,780
SMc02520
SMc02519: SMc02519 - ABC transporter ATP-binding protein, at 3,272,819 to 3,273,889
SMc02519
Group
Condition
SMc02523
SMc02522
SMc02521
SMc02520
SMc02519
stress
Sisomicin 0.004 mg/ml
-0.1
-0.2
-0.5
-4.1
+0.3
carbon source
Glycerol (C)
+0.1
+0.1
+0.1
-5.0
+0.3
stress
Fusidic 0.0001 mg/ml
-0.1
-0.2
+0.4
-4.1
+0.4
nitrogen source
L-Asparagine (N)
-0.3
-0.2
-3.1
+0.7
+0.3
stress
Nickel (II) chloride 1 mM
-0.4
+0.9
+0.1
-3.1
-0.1
carbon source
pipercolic (C)
-0.0
+0.0
-2.1
+0.0
-0.3
stress
Cobalt chloride 0.16 mM
-0.0
+0.0
-0.1
-2.1
+0.1
r2a control
R2A control for volatile experiments
-0.1
-0.2
-0.4
-1.1
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.4
-0.0
+0.8
-2.0
-0.3
carbon source
Xylobiose (C)
-0.1
+0.1
-1.4
-0.2
-0.2
carbon source
Lactitol (C)
-0.2
+0.1
-1.4
-0.4
+0.2
stress
A22 0.02 mg/ml
+0.0
+0.1
-0.2
-1.8
+0.3
stress
nitrite 20 mM
-0.2
-0.0
-0.3
-1.3
+0.2
carbon source
methyl-beta-D-xylopyranoside (C)
+0.1
+0.1
-1.6
-0.2
+0.1
carbon source
L-Histidine (C)
+0.1
+0.1
-1.7
+0.4
-0.0
nitrogen source
L-Arginine (N)
-0.2
-0.1
-1.2
+0.7
-0.3
nitrogen source
L-Serine (N)
+0.2
+0.0
-1.4
+0.3
+0.2
r2a control
R2A control for volatile experiments
+0.3
-0.3
+0.5
-1.2
+0.0
nitrogen source
L-Glutamine (N)
+0.1
+0.2
-1.4
+0.6
+0.0
nitrogen source
Gly-DL-Asp (N)
+0.3
+0.1
-1.3
+0.4
+0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.1
-0.0
-1.6
+1.0
+0.3
nutrient
L-Lysine
+0.2
-0.1
-0.7
+0.6
+0.4
stress
Chloride 200 mM
-0.5
-0.3
-0.2
+1.6
+0.1
nitrogen source
Gelatin (N)
+0.2
+0.3
-0.7
+0.6
+0.3
tsb
Day4 LB
-0.1
+0.1
+1.3
-0.8
+0.3
stress
nitrate 40 mM
-0.0
+0.0
-0.2
+1.6
+0.4
pH
LB, pH8
-0.1
+0.2
+0.4
+0.8
+0.7
lb
LB
-0.0
-0.1
+0.7
+1.6
+0.3
lb
LB
+0.0
+0.4
+0.5
+1.5
+0.2
stress
perchlorate 10 mM
-0.1
+0.7
-0.0
+3.6
+0.2
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