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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc02516 and SMc02515 overlap by 1 nucleotides
SMc02515 and SMc02514 are separated by 81 nucleotides
SMc02514 and SMc02513 are separated by 255 nucleotides
SMc02513 and SMc02512 are separated by 206 nucleotides
SMc02516: SMc02516 - ABC transporter permease, at 3,275,872 to 3,276,696
SMc02516
SMc02515: SMc02515 - hypothetical protein, at 3,276,696 to 3,277,115
SMc02515
SMc02514: SMc02514 - periplasmic binding ABC transporter protein, at 3,277,197 to 3,278,921
SMc02514
SMc02513: SMc02513 - permease transmembrane protein, at 3,279,177 to 3,280,649
SMc02513
SMc02512: SMc02512 - permease transmembrane protein, at 3,280,856 to 3,282,340
SMc02512
Group
Condition
SMc02516
SMc02515
SMc02514
SMc02513
SMc02512
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.8
-1.1
-0.5
-0.3
+0.0
nitrogen source
L-Leucine (N)
-0.1
-1.5
+0.0
-0.0
-0.0
carbon source
D-Glucose (C)
-0.3
-0.5
-0.3
-0.3
-0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.4
-1.6
-0.1
+0.1
+0.5
pH
LB, pH8
+0.4
-0.3
-0.6
+0.1
-1.1
carbon source
Myristic (C)
-0.2
-0.4
-0.4
-0.1
-0.2
nutrient
Min media with glucose
-0.1
-0.6
-0.4
+0.1
-0.2
nutrient
Min media with glucose
-0.3
-0.5
-0.6
+0.1
+0.3
nitrogen source
L-Asparagine (N)
+0.3
-0.5
-0.2
-0.0
-0.3
stress
Paraquat dichloride 0.05 mg/ml
+0.2
-0.4
-0.3
+0.1
-0.3
pH
LB, pH8
+0.3
-0.3
-0.6
+0.2
-0.2
lb
LB
+0.4
-0.5
-0.4
+0.1
-0.1
nitrogen source
nitrate (N)
-0.1
-0.1
-0.7
+0.2
+0.2
stress
Cisplatin 0.0005 mg/ml
+0.3
-0.1
-0.4
+0.2
-0.6
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.4
+0.2
-0.5
+0.0
+0.2
stress
copper (II) chloride 1 mM
+0.4
+0.1
-0.1
-0.2
-0.5
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.2
-0.5
-0.4
+0.5
-0.2
stress
Nickel (II) chloride 1 mM
+0.0
+0.3
-0.8
+0.2
-0.0
stress
Thallium(I) acetate 0.001 mg/ml
+0.2
+0.5
-0.0
-0.3
-0.5
stress
Thallium(I) acetate 0.0025 mg/ml
+0.4
+0.6
-0.2
-0.5
-0.1
stress
nitrate 40 mM
+0.1
+0.6
-0.3
+0.0
-0.4
nitrogen source
L-Arginine (N)
+0.4
+0.8
-0.3
-0.5
-0.3
stress
Aluminum chloride
+0.4
+0.3
-0.4
+0.2
-0.3
stress
Paraquat dichloride 0.3 mg/ml
+0.3
+0.5
-0.1
+0.0
-0.6
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
+0.4
-0.1
-0.2
+0.5
nitrogen source
NAG (N)
-0.0
+0.3
+0.2
+0.5
-0.3
stress
perchlorate 10 mM
+0.4
+0.5
-0.3
+0.3
-0.2
stress
Paraquat dichloride 0.2 mg/ml
+0.3
+0.6
+0.1
+0.2
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
+0.5
-0.0
-0.2
-0.1
tsb
Day4 LB
+0.4
+0.3
+0.3
+0.2
+0.0
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