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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc02490 and SMc02489 are separated by 120 nucleotides
SMc02489 and SMc02488 are separated by 221 nucleotides
SMc02488 and SMc02487 are separated by 205 nucleotides
SMc02487 and SMc02486 are separated by 36 nucleotides
SMc02490: SMc02490 - hypothetical protein, at 3,304,574 to 3,305,497
SMc02490
SMc02489: SMc02489 - site-specific tyrosine recombinase XerC, at 3,305,618 to 3,306,610
SMc02489
SMc02488: SMc02488 - hypothetical protein, at 3,306,832 to 3,307,908
SMc02488
SMc02487: SMc02487 - dihydrolipoamide dehydrogenase, at 3,308,114 to 3,309,520
SMc02487
SMc02486: SMc02486 - oxidoreductase, at 3,309,557 to 3,310,309
SMc02486
Group
Condition
SMc02490
SMc02489
SMc02488
SMc02487
SMc02486
stress
Aluminum chloride
+0.1
N.D.
-0.9
N.D.
-0.4
nitrogen source
L-Asparagine (N)
+0.2
N.D.
-0.5
N.D.
-0.8
stress
Nickel (II) chloride 1 mM
+0.5
N.D.
-1.1
N.D.
-0.2
nitrogen source
L-Glutamine (N)
+0.2
N.D.
-0.5
N.D.
-0.3
stress
Paraquat dichloride 0.2 mg/ml
+0.3
N.D.
-0.1
N.D.
-0.7
lb
LB
+0.3
N.D.
-0.8
N.D.
-0.0
carbon source
D-Arabinose (C)
+0.4
N.D.
-0.0
N.D.
-0.6
stress
nitrate 40 mM
+0.6
N.D.
-0.6
N.D.
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.1
N.D.
-1.0
N.D.
+0.2
stress
Cisplatin 0.001 mg/ml
+0.8
N.D.
-0.2
N.D.
-0.3
pH
LB, pH6
+0.4
N.D.
-0.4
N.D.
+0.4
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.8
N.D.
-0.2
N.D.
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
N.D.
-0.5
N.D.
+0.5
stress
Thallium(I) acetate 0.001 mg/ml
+0.5
N.D.
+0.2
N.D.
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.0
N.D.
-0.7
N.D.
+0.1
stress
Thallium(I) acetate 0.0025 mg/ml
+0.6
N.D.
+0.3
N.D.
-0.4
stress
Cisplatin 0.0005 mg/ml
+0.8
N.D.
-0.0
N.D.
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.1
N.D.
-0.8
N.D.
+0.3
lb
LB
+0.9
N.D.
-0.6
N.D.
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.1
N.D.
-0.6
N.D.
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.0
N.D.
+0.0
N.D.
-0.4
pH
LB, pH8
+1.3
N.D.
-0.3
N.D.
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.9
N.D.
+0.0
N.D.
-0.1
r2a control
R2A control for volatile experiments
+0.4
N.D.
+0.6
N.D.
+0.2
r2a control
R2A control for volatile experiments
+0.3
N.D.
+0.5
N.D.
+0.5
pH
LB, pH8
+1.3
N.D.
-0.1
N.D.
+0.0
lb
LB
+1.7
N.D.
-0.1
N.D.
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.9
N.D.
+0.3
N.D.
+0.4
nitrogen source
L-Arginine (N)
+2.0
N.D.
-0.2
N.D.
-0.2
stress
Cobalt chloride 0.16 mM
+1.8
N.D.
+0.1
N.D.
-0.2
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