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Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc02335 and SMc02336 are separated by 30 nucleotides
SMc02336 and SMc02452 are separated by 219 nucleotides
SMc02452 and SMc02337 overlap by 4 nucleotides
SMc02337 and SMc02338 are separated by 49 nucleotides
SMc02335: SMc02335 - pentose kinase, at 2,754,193 to 2,755,722
SMc02335
SMc02336: SMc02336 - oxidoreductase, at 2,755,753 to 2,756,511
SMc02336
SMc02452: SMc02452 - ABC transporter permease, at 2,756,731 to 2,757,708
SMc02452
SMc02337: SMc02337 - ABC transporter ATP-binding protein, at 2,757,705 to 2,759,210
SMc02337
SMc02338: SMc02338 - periplasmic binding ABC transporter protein, at 2,759,260 to 2,760,225
SMc02338
Group
Condition
SMc02335
SMc02336
SMc02452
SMc02337
SMc02338
nitrogen source
L-Asparagine (N)
-0.7
-0.4
-0.3
-0.7
-2.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.1
-0.4
+0.4
-4.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.1
+0.0
+0.1
-2.9
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.2
-0.1
-0.1
-0.4
-1.7
carbon source
Lactitol (C)
+0.0
-0.0
-0.1
-0.0
-1.5
nitrogen source
L-Histidine (N)
+0.2
+0.0
+0.1
-0.3
-1.6
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.2
-1.0
-0.3
-0.5
+0.5
stress
Chlorite 0.1 mM
-0.1
-0.0
-0.3
+0.1
-1.1
carbon source
D-Trehalose (C)
+0.0
-0.2
+0.1
+0.1
-1.4
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.1
-0.1
+0.1
-0.5
-0.8
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
+0.1
+0.1
-0.6
-0.9
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
+0.0
-0.3
+0.2
-1.0
carbon source
Methyl beta-D-glucopyranoside (C)
+0.1
-0.1
-0.4
-0.1
-0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
+0.1
-0.7
+0.3
-0.9
pH
LB, pH6
-0.2
+0.2
+0.0
+0.1
-1.4
nutrient
Min media with glucose
-0.3
-0.3
+0.1
+0.2
-0.8
stress
Paraquat dichloride 0.2 mg/ml
+0.4
-0.4
+0.1
-0.1
-1.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.1
+0.0
-0.5
-0.9
lb
LB
-0.0
-0.1
+0.2
+0.1
-1.2
nitrogen source
L-Leucine (N)
+0.0
+0.4
+0.2
-0.6
-0.7
stress
Nickel (II) chloride 1 mM
+0.1
+0.2
+0.2
-0.4
-0.7
stress
Thallium(I) acetate 0.0025 mg/ml
-0.1
+0.2
-0.0
+0.6
-0.8
nitrogen source
Gelatin (N)
-0.1
-0.1
-0.0
-0.5
+0.9
nitrogen source
nitrate (N)
-0.3
+0.2
-0.2
-0.1
+0.9
r2a control
R2A control for volatile experiments
+0.2
-0.3
-0.4
+0.2
+1.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.1
+0.3
+0.2
-0.9
+1.2
carbon source
Fumarate (C)
+0.2
-0.3
-0.2
+0.3
+0.9
carbon source
L-Leucine (C)
+0.3
+0.1
-0.2
-0.1
+0.7
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-0.1
-0.0
+0.1
+0.1
+1.2
r2a control
R2A control for volatile experiments
+0.2
+0.1
+0.1
+0.1
+1.3
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