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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc02675 and SMc02432 are separated by 682 nucleotides
SMc02432 and SMc02433 are separated by 79 nucleotides
SMc02433 and SMc02434 are separated by 341 nucleotides
SMc02434 and SMc02435 are separated by 331 nucleotides
SMc02675: SMc02675 - ribosomal RNA-16S, at 2,810,004 to 2,811,487
SMc02675
SMc02432: SMc02432 - hypothetical protein, at 2,812,170 to 2,814,110
SMc02432
SMc02433: SMc02433 - ATP-dependent protease, at 2,814,190 to 2,816,796
SMc02433
SMc02434: SMc02434 - hypothetical protein, at 2,817,138 to 2,817,782
SMc02434
SMc02435: SMc02435 - methyltransferase, at 2,818,114 to 2,818,995
SMc02435
Group
Condition
SMc02675
SMc02432
SMc02433
SMc02434
SMc02435
stress
Fusidic 0.0001 mg/ml
N.D.
N.D.
-0.0
-5.7
-4.2
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
N.D.
N.D.
+0.2
-6.2
-1.4
stress
Cobalt chloride 0.16 mM
N.D.
N.D.
-0.0
-1.4
-3.3
nitrogen source
nitrate (N)
N.D.
N.D.
-0.3
-2.9
-1.5
nitrogen source
NAG (N)
N.D.
N.D.
-0.2
-3.0
-1.2
stress
Thallium(I) acetate 0.001 mg/ml
N.D.
N.D.
+0.1
-0.2
-4.1
stress
Polymyxin B sulfate 0.00005 mg/ml
N.D.
N.D.
+0.6
+0.0
-4.7
carbon source
D-Trehalose (C)
N.D.
N.D.
+0.2
-1.6
-2.4
stress
A22 0.02 mg/ml
N.D.
N.D.
-0.3
-0.9
-2.6
carbon source
L-Histidine (C)
N.D.
N.D.
-0.4
-0.6
-2.8
stress
1-octen-3-ol 0.6030326667 mM
N.D.
N.D.
-0.2
-1.4
-2.2
carbon source
Beta-Lactose (C)
N.D.
N.D.
-0.1
-1.4
-2.1
carbon source
Beta-Lactose (C)
N.D.
N.D.
-0.0
-0.6
-3.0
carbon source
Xylobiose (C)
N.D.
N.D.
+0.2
-1.3
-2.3
carbon source
L-Proline (C)
N.D.
N.D.
-0.1
-1.8
-1.6
stress
Aluminum chloride
N.D.
N.D.
+0.2
-1.3
-2.1
stress
Thallium(I) acetate 0.0025 mg/ml
N.D.
N.D.
+0.1
-0.3
-3.0
carbon source
L-Glutamine (C)
N.D.
N.D.
-0.3
-0.9
-2.0
stress
Nickel (II) chloride 0.5 mM
N.D.
N.D.
+0.2
-0.6
-2.8
stress
Chlorite 0.1 mM
N.D.
N.D.
+0.3
+0.8
-4.1
stress
Sisomicin 0.004 mg/ml
N.D.
N.D.
+0.5
-1.1
-1.7
stress
Paraquat dichloride 0.2 mg/ml
N.D.
N.D.
-0.4
+1.2
-2.8
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
N.D.
+0.1
+1.6
-3.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
N.D.
-0.3
+2.2
-1.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
N.D.
N.D.
-0.3
+0.1
+2.9
stress
perchlorate 10 mM
N.D.
N.D.
-0.3
+3.4
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
N.D.
-0.4
+2.9
+1.3
stress
copper (II) chloride 1 mM
N.D.
N.D.
-0.0
+2.3
+1.9
pH
LB, pH6
N.D.
N.D.
-0.5
+6.5
+4.2
pH
LB, pH6
N.D.
N.D.
-0.2
+7.6
+3.7
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