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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc02420 and SMc02421 overlap by 1 nucleotides
SMc02421 and SMc02423 overlap by 8 nucleotides
SMc02423 and SMc02424 overlap by 4 nucleotides
SMc02424 and SMc02425 are separated by 80 nucleotides
SMc02420: SMc02420 - cytosine deaminase, at 2,792,811 to 2,794,004
SMc02420
SMc02421: SMc02421 - N-ethylammeline chlorohydrolase, at 2,794,004 to 2,795,497
SMc02421
SMc02423: SMc02423 - oligopeptide transport ATP-binding ABC transporter protein, at 2,795,490 to 2,796,473
SMc02423
SMc02424: SMc02424 - oligopeptide transport ATP-binding ABC transporter protein, at 2,796,470 to 2,797,474
SMc02424
SMc02425: SMc02425 - transcriptional regulator, at 2,797,555 to 2,798,232
SMc02425
Group
Condition
SMc02420
SMc02421
SMc02423
SMc02424
SMc02425
carbon source
D-Trehalose (C)
-0.3
-0.3
-0.2
-0.0
-6.8
carbon source
D-Glucosamine Hydrochloride (C)
-0.3
-0.2
-0.0
-0.1
-6.7
carbon source
L-Proline (C)
-0.2
-0.3
-0.1
-0.0
-6.8
carbon source
L-Lysine (C)
+0.0
-0.1
-0.2
-0.1
-6.8
carbon source
Beta-Lactose (C)
+0.2
-0.1
-0.1
+0.0
-6.8
carbon source
Beta-Lactose (C)
+0.0
-0.0
-0.1
+0.0
-6.7
carbon source
D-Glucose (C)
-0.1
+0.1
+0.0
-0.1
-6.2
carbon source
Lactulose (C)
-0.1
+0.1
-0.1
-0.0
-6.0
carbon source
D-Maltose (C)
+0.1
-0.3
+0.1
-0.1
-6.0
carbon source
L-Glutamine (C)
+0.1
-0.2
+0.2
-0.1
-6.1
carbon source
D-Glucose (C)
-0.2
-0.1
+0.1
+0.0
-5.6
nitrogen source
nitrate (N)
-0.4
-0.2
+0.1
-0.1
-5.1
carbon source
Lactitol (C)
-0.1
+0.0
-0.3
-0.0
-5.3
carbon source
Methyl beta-D-glucopyranoside (C)
-0.1
-0.1
+0.1
-0.0
-5.6
carbon source
Lactulose (C)
+0.0
+0.0
-0.1
+0.2
-5.8
carbon source
Methyl beta-D-glucopyranoside (C)
-0.2
+0.1
-0.1
+0.0
-5.4
carbon source
D-Glucose (C)
+0.2
-0.1
-0.1
-0.2
-5.2
carbon source
Lactitol (C)
-0.4
-0.3
+0.3
+0.1
-4.9
carbon source
methyl-beta-D-xylopyranoside (C)
-0.0
+0.1
+0.2
-0.1
-5.4
carbon source
Xylobiose (C)
+0.0
+0.0
+0.2
+0.1
-5.5
carbon source
D-Salicin (C)
+0.0
+0.0
+0.0
-0.1
-5.1
carbon source
D-Trehalose (C)
-0.2
-0.0
+0.1
+0.1
-4.9
carbon source
Xylobiose (C)
+0.1
-0.0
+0.2
+0.1
-5.1
nutrient
Min media with glucose
+0.2
-0.0
-0.5
-0.0
-4.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.2
-0.4
+0.4
-3.9
carbon source
Beta-Lactose (C)
+0.1
+0.1
+0.1
+0.1
-4.8
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.2
+0.1
+0.3
-0.0
-4.4
carbon source
D-Ribose (C)
-0.1
-0.1
+0.5
+0.1
-4.4
carbon source
D-Glucose (C)
+0.4
+0.1
+0.4
-0.2
-4.5
carbon source
methyl-beta-D-xylopyranoside (C)
+0.3
+0.0
+0.3
+0.1
-4.6
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