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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc02413 and SMc02414 are separated by 58 nucleotides
SMc02414 and SMc02415 are separated by 188 nucleotides
SMc02415 and SMc02416 are separated by 77 nucleotides
SMc02416 and SMc02417 are separated by 278 nucleotides
SMc02413: SMc02413 - aminotransferase, at 2,782,766 to 2,784,079
SMc02413
SMc02414: SMc02414 - hydrolase, at 2,784,138 to 2,785,613
SMc02414
SMc02415: SMc02415 - peptide-binding periplasmic ABC transporter protein, at 2,785,802 to 2,787,382
SMc02415
SMc02416: SMc02416 - N-ethylammeline chlorohydrolase, at 2,787,460 to 2,788,950
SMc02416
SMc02417: SMc02417 - peptide-binding periplasmic ABC transporter protein, at 2,789,229 to 2,790,791
SMc02417
Group
Condition
SMc02413
SMc02414
SMc02415
SMc02416
SMc02417
nitrogen source
L-Arginine (N)
-0.1
-0.0
-0.4
-0.3
-0.0
carbon source
L-Lysine (C)
-0.2
+0.0
-0.1
-0.3
-0.1
stress
Cisplatin 0.0005 mg/ml
-0.4
+0.0
-0.2
-0.1
-0.0
r2a control
R2A control for volatile experiments
+0.2
+0.0
-0.2
-0.1
-0.4
carbon source
D-Mannose (C)
-0.1
-0.1
-0.4
-0.2
+0.1
stress
3-octanone 2.655166667 mM
+0.2
-0.3
-0.2
-0.1
-0.0
carbon source
L-Arabinose (C)
+0.2
-0.1
-0.2
-0.3
-0.2
nitrogen source
L-Histidine (N)
-0.0
+0.1
+0.2
-0.4
-0.3
pH
LB, pH8
-0.2
+0.3
-0.2
-0.2
-0.1
r2a control
R2A control for volatile experiments
+0.3
-0.0
-0.2
-0.1
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
-0.3
+0.0
-0.5
+0.1
stress
Fusidic 0.0001 mg/ml
-0.2
+0.1
+0.2
-0.3
+0.0
r2a control
R2A control for volatile experiments
+0.3
-0.0
-0.2
+0.1
-0.3
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.1
+0.3
-0.1
+0.1
-0.3
pH
LB, pH6
-0.2
+0.1
+0.2
-0.2
+0.2
lb
LB
+0.2
+0.4
-0.1
-0.0
-0.4
nitrogen source
NAG (N)
+0.3
+0.2
-0.1
+0.1
-0.2
stress
Chlorite 0.1 mM
+0.1
+0.4
-0.5
+0.4
-0.1
nitrogen source
Uridine (N)
+0.3
+0.2
+0.2
-0.2
-0.1
carbon source
Lactitol (C)
-0.1
+0.3
+0.3
+0.1
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
+0.1
+0.3
-0.4
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
+0.2
+0.2
-0.2
+0.2
stress
perchlorate 10 mM
-0.3
+0.6
+0.3
-0.2
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
+0.3
+0.1
-0.2
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.1
+0.4
-0.2
+0.2
carbon source
D-Glucosamine Hydrochloride (C)
-0.2
+0.3
+0.4
-0.0
+0.1
stress
Sisomicin 0.004 mg/ml
-0.1
+0.1
+0.3
+0.2
+0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.3
+0.2
+0.3
+0.1
+0.5
stress
Cisplatin 0.001 mg/ml
+0.1
+0.0
+0.4
+0.3
+0.1
carbon source
D-Xylose (C)
+0.1
+0.3
+0.3
+0.1
+0.1
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