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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc02393 and SMc02409 are separated by 286 nucleotides
SMc02409 and SMc02394 are separated by 293 nucleotides
SMc02394 and SMc02461 are separated by 13 nucleotides
SMc02461 and SMc02396 are separated by 680 nucleotides
SMc02393: SMc02393 - histidinol-phosphate aminotransferase, at 1,145,519 to 1,146,640
SMc02393
SMc02409: SMc02409 - tRNA-Ser, at 1,146,927 to 1,147,016
SMc02409
SMc02394: SMc02394 - hypothetical protein, at 1,147,310 to 1,147,618
SMc02394
SMc02461: SMc02461 - hypothetical protein, at 1,147,632 to 1,147,928
SMc02461
SMc02396: SMc02396 - outer membrane protein, at 1,148,609 to 1,149,646
SMc02396
Group
Condition
SMc02393
SMc02409
SMc02394
SMc02461
SMc02396
stress
Nickel (II) chloride 1 mM
-0.6
N.D.
N.D.
N.D.
N.D.
stress
Chlorite 0.1 mM
-0.5
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
N.D.
N.D.
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
N.D.
N.D.
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
N.D.
N.D.
N.D.
N.D.
carbon source
5-Aminovaleric (C)
-0.3
N.D.
N.D.
N.D.
N.D.
carbon source
L-Malic (C)
-0.3
N.D.
N.D.
N.D.
N.D.
carbon source
pipercolic (C)
-0.3
N.D.
N.D.
N.D.
N.D.
stress
copper (II) chloride 1 mM
-0.2
N.D.
N.D.
N.D.
N.D.
stress
Sisomicin 0.004 mg/ml
-0.2
N.D.
N.D.
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
-0.2
N.D.
N.D.
N.D.
N.D.
carbon source
Mannobiose (C)
-0.2
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Histidine (N)
-0.2
N.D.
N.D.
N.D.
N.D.
carbon source
Maltitol (C)
-0.2
N.D.
N.D.
N.D.
N.D.
carbon source
D-Cellobiose (C)
-0.2
N.D.
N.D.
N.D.
N.D.
stress
Thallium(I) acetate 0.001 mg/ml
-0.2
N.D.
N.D.
N.D.
N.D.
carbon source
Myristic (C)
+0.2
N.D.
N.D.
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
+0.2
N.D.
N.D.
N.D.
N.D.
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.2
N.D.
N.D.
N.D.
N.D.
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.2
N.D.
N.D.
N.D.
N.D.
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.2
N.D.
N.D.
N.D.
N.D.
stress
1-octen-3-ol 0.6030326667 mM
+0.2
N.D.
N.D.
N.D.
N.D.
stress
1-octen-3-ol 0.4933903333 mM
+0.2
N.D.
N.D.
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
+0.3
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Leucine (N)
+0.3
N.D.
N.D.
N.D.
N.D.
nitrogen source
Gelatin (N)
+0.3
N.D.
N.D.
N.D.
N.D.
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
N.D.
N.D.
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
+0.3
N.D.
N.D.
N.D.
N.D.
dmso control
DMSO control
+0.3
N.D.
N.D.
N.D.
N.D.
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