Fitness for 5 genes in Sinorhizobium meliloti 1021

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500 ntSMc02334 and SMc02335 overlap by 4 nucleotidesSMc02335 and SMc02336 are separated by 30 nucleotidesSMc02336 and SMc02452 are separated by 219 nucleotidesSMc02452 and SMc02337 overlap by 4 nucleotides SMc02334: SMc02334 - pentose kinase transmembrane protein, at 2,752,649 to 2,754,196 SMc02334 SMc02335: SMc02335 - pentose kinase, at 2,754,193 to 2,755,722 SMc02335 SMc02336: SMc02336 - oxidoreductase, at 2,755,753 to 2,756,511 SMc02336 SMc02452: SMc02452 - ABC transporter permease, at 2,756,731 to 2,757,708 SMc02452 SMc02337: SMc02337 - ABC transporter ATP-binding protein, at 2,757,705 to 2,759,210 SMc02337
Group Condition SMc02334 SMc02335 SMc02336 SMc02452 SMc02337
nitrogen source L-Asparagine (N) -0.3 -0.7 -0.4 -0.3 -0.7
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -0.3 -0.2 -1.0 -0.3 -0.5
volatiles R2A-HEPES with volatiles from Trichoderma atroviridae IMI -0.3 -0.4 -0.3 +0.0 -0.5
volatiles R2A-HEPES with volatiles from Trichoderma atroviridae IMI -0.3 -0.1 -0.3 -0.3 -0.0
carbon source acetate (C) +0.0 -0.2 -0.3 -0.2 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +0.1 +0.0 -0.2 -0.7
stress 3-octanone 5.310333333 mM -0.2 +0.0 -0.5 +0.1 -0.2
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) +0.2 -0.1 -0.4 -0.2 -0.3
nitrogen source L-Arginine (N) -0.2 -0.1 +0.3 -0.4 -0.1
r2a-hepes control R2A-HEPES control for volatile experiments +0.2 -0.2 -0.1 -0.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 -0.1 +0.3 +0.2 -0.9
r2a control R2A control for volatile experiments -0.2 +0.2 -0.3 -0.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +0.2 -0.1 +0.0 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 -0.0 +0.1 -0.7 +0.3
nitrogen source nitrate (N) +0.2 -0.3 +0.2 -0.2 -0.1
r2a-hepes control R2A-HEPES control for volatile experiments +0.3 -0.1 +0.1 +0.1 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -0.2 +0.1 -0.4 +0.4
stress Nickel (II) chloride 1 mM -0.3 +0.1 +0.2 +0.2 -0.4
volatiles R2A-HEPES with volatiles from Trichoderma atroviridae IMI +0.4 -0.1 -0.1 +0.1 -0.5
volatiles R2A-HEPES with volatiles from Trichoderma atroviridae IMI +0.3 +0.2 -0.2 +0.1 -0.4
carbon source Fumarate (C) -0.1 +0.2 -0.3 -0.2 +0.3
nitrogen source NAG (N) -0.4 -0.1 -0.1 +0.3 +0.2
carbon source D-Glucosamine Hydrochloride (C) -0.1 +0.2 +0.2 -0.1 -0.3
stress Paraquat dichloride 0.2 mg/ml +0.1 +0.4 -0.4 +0.1 -0.1
stress Polymyxin B sulfate 0.00005 mg/ml -0.3 -0.1 +0.2 -0.2 +0.5
nitrogen source L-Leucine (N) +0.2 +0.0 +0.4 +0.2 -0.6
carbon source L-Lactate (C) -0.3 +0.0 +0.4 -0.1 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 +0.1 -0.3 +0.2 +0.4
pH LB, pH7 +0.3 -0.0 -0.2 +0.1 +0.4
stress Thallium(I) acetate 0.0025 mg/ml -0.1 -0.1 +0.2 -0.0 +0.6
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