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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc02237 and SMc02238 are separated by 107 nucleotides
SMc02238 and SMc02239 are separated by 38 nucleotides
SMc02239 and SMc02240 are separated by 29 nucleotides
SMc02240 and SMc02241 are separated by 108 nucleotides
SMc02237: SMc02237 - DNA damage response helicase, ligase-associated
(from data)
, at 600,851 to 603,400
SMc02237
SMc02238: SMc02238 - hypothetical protein, at 603,508 to 604,014
SMc02238
SMc02239: SMc02239 - hypothetical protein, at 604,053 to 604,514
SMc02239
SMc02240: SMc02240 - hypothetical protein, at 604,544 to 605,179
SMc02240
SMc02241: SMc02241 - hypothetical protein, at 605,288 to 606,226
SMc02241
Group
Condition
SMc02237
SMc02238
SMc02239
SMc02240
SMc02241
dmso control
DMSO control
+0.0
-3.7
-0.1
+0.1
-0.1
stress
Cisplatin 0.0005 mg/ml
-3.3
+0.6
-0.1
-0.5
+0.3
stress
Cisplatin 0.001 mg/ml
-3.9
+0.4
-0.1
+0.0
+0.9
dmso control
DMSO control
+0.0
-2.1
-0.1
-0.1
-0.1
stress
1-octen-3-ol 0.6030326667 mM
+0.0
-2.3
+0.2
-0.1
-0.1
nitrogen source
L-Leucine (N)
-0.1
+1.0
-0.1
-3.0
-0.2
stress
1-octen-3-ol 0.4933903333 mM
-0.1
-2.0
-0.0
-0.1
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
+0.0
-2.2
+0.1
+0.0
-0.1
pH
LB, pH6
-0.1
-1.7
+0.1
-0.5
+0.1
stress
3-octanone 0.456 mM
-0.1
-1.6
-0.0
-0.0
-0.2
stress
1-octen-3-ol 0.5427293333 mM
-0.0
-1.4
-0.1
-0.2
-0.1
nitrogen source
L-Arginine (N)
-0.0
+0.1
-0.7
-0.3
-0.9
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.1
-1.9
-0.1
+0.1
+0.1
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-0.0
-1.8
+0.1
-0.1
+0.2
stress
Nickel (II) chloride 1 mM
-0.0
-0.3
-0.7
-0.5
+0.3
stress
3-octanone 5.310333333 mM
+0.0
-1.3
+0.1
-0.2
+0.2
r2a control
R2A control for volatile experiments
+0.0
-1.7
+0.1
+0.1
+0.3
r2a control
R2A control for volatile experiments
+0.2
-0.9
+0.3
-0.3
-0.1
r2a control
R2A control for volatile experiments
+0.2
-1.3
+0.1
-0.1
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
-0.6
-0.7
-0.1
+0.6
pH
LB, pH8
-0.0
-1.1
+0.0
+0.4
+0.5
nitrogen source
L-Histidine (N)
-0.0
+1.0
-0.5
+0.1
+0.2
lb
LB
-0.0
-0.4
+0.2
+0.4
+0.7
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.3
+0.6
+0.5
-0.1
+0.3
stress
Paraquat dichloride 0.2 mg/ml
-0.0
+1.2
-0.4
-0.1
+0.5
stress
nitrate 40 mM
-0.0
+0.9
-0.4
+0.0
+0.8
stress
perchlorate 10 mM
+0.1
+0.3
-0.1
+0.6
+0.8
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.2
+1.0
-0.3
+0.0
+0.9
nitrogen source
L-Asparagine (N)
-0.1
+1.5
+0.7
-0.1
+0.3
stress
Sisomicin 0.004 mg/ml
+0.1
+1.0
+0.5
+0.3
+0.7
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