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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc02236 and SMc02237 are separated by 243 nucleotides
SMc02237 and SMc02238 are separated by 107 nucleotides
SMc02238 and SMc02239 are separated by 38 nucleotides
SMc02239 and SMc02240 are separated by 29 nucleotides
SMc02236: SMc02236 - DNA repair nuclease, ligase-associated (TIGR04123)
(from data)
, at 599,879 to 600,607
SMc02236
SMc02237: SMc02237 - DNA damage response helicase, ligase-associated
(from data)
, at 600,851 to 603,400
SMc02237
SMc02238: SMc02238 - hypothetical protein, at 603,508 to 604,014
SMc02238
SMc02239: SMc02239 - hypothetical protein, at 604,053 to 604,514
SMc02239
SMc02240: SMc02240 - hypothetical protein, at 604,544 to 605,179
SMc02240
Group
Condition
SMc02236
SMc02237
SMc02238
SMc02239
SMc02240
stress
Cisplatin 0.0005 mg/ml
-3.3
-3.3
+0.6
-0.1
-0.5
stress
Cisplatin 0.001 mg/ml
-2.9
-3.9
+0.4
-0.1
+0.0
dmso control
DMSO control
-0.1
+0.0
-3.7
-0.1
+0.1
dmso control
DMSO control
+0.1
+0.0
-2.1
-0.1
-0.1
stress
1-octen-3-ol 0.6030326667 mM
+0.0
+0.0
-2.3
+0.2
-0.1
pH
LB, pH6
+0.1
-0.1
-1.7
+0.1
-0.5
stress
1-octen-3-ol 0.4933903333 mM
+0.2
-0.1
-2.0
-0.0
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
+0.2
+0.0
-2.2
+0.1
+0.0
stress
Nickel (II) chloride 1 mM
-0.3
-0.0
-0.3
-0.7
-0.5
stress
1-octen-3-ol 0.5427293333 mM
-0.1
-0.0
-1.4
-0.1
-0.2
nitrogen source
L-Leucine (N)
+0.3
-0.1
+1.0
-0.1
-3.0
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.2
-0.0
-1.8
+0.1
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.2
+0.1
-1.9
-0.1
+0.1
stress
3-octanone 0.456 mM
+0.2
-0.1
-1.6
-0.0
-0.0
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
+0.1
-0.0
-1.3
+0.0
-0.1
stress
3-octanone 5.310333333 mM
-0.0
+0.0
-1.3
+0.1
-0.2
r2a control
R2A control for volatile experiments
+0.1
+0.0
-1.7
+0.1
+0.1
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
+0.1
-0.0
-1.4
+0.0
+0.1
stress
3-octanone 5.310333333 mM
+0.2
+0.1
-1.2
+0.0
-0.2
r2a control
R2A control for volatile experiments
-0.0
+0.2
-1.3
+0.1
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.4
-0.6
-0.7
-0.1
r2a control
R2A control for volatile experiments
+0.2
+0.2
-0.9
+0.3
-0.3
stress
Chlorite 0.1 mM
-0.3
-0.0
+0.8
+0.0
-0.3
stress
Paraquat dichloride 0.2 mg/ml
-0.1
-0.0
+1.2
-0.4
-0.1
nitrogen source
L-Histidine (N)
+0.0
-0.0
+1.0
-0.5
+0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.2
-0.3
+0.6
+0.5
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.7
+0.3
+0.4
-0.3
-0.3
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.2
+0.2
+1.0
-0.3
+0.0
stress
Sisomicin 0.004 mg/ml
-0.0
+0.1
+1.0
+0.5
+0.3
nitrogen source
L-Asparagine (N)
+0.3
-0.1
+1.5
+0.7
-0.1
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