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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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500 nt
SMc02162 and SMc02161 are separated by 337 nucleotides
SMc02161 and SMc02160 are separated by 59 nucleotides
SMc02160 and SMc02159 are separated by 95 nucleotides
SMc02159 and SMc02158 overlap by 4 nucleotides
SMc02162: SMc02162 - long-chain-fatty-acid--CoA ligase, at 532,686 to 534,386
SMc02162
SMc02161: SMc02161 - transport transmembrane protein, at 534,724 to 535,959
SMc02161
SMc02160: SMc02160 - ABC transporter permease, at 536,019 to 537,329
SMc02160
SMc02159: SMc02159 - hypothetical protein, at 537,425 to 538,090
SMc02159
SMc02158: SMc02158 - acyltransferase, at 538,087 to 538,698
SMc02158
Group
Condition
SMc02162
SMc02161
SMc02160
SMc02159
SMc02158
carbon source
Myristic (C)
-5.4
+0.3
N.D.
-0.4
-0.2
carbon source
Myristic (C)
-5.3
+0.1
N.D.
-0.3
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.2
N.D.
-1.9
-0.0
stress
Chlorite 0.1 mM
-0.9
+0.2
N.D.
-0.8
+0.3
carbon source
L-Histidine (C)
-0.3
-0.5
N.D.
-0.2
+0.1
pH
LB, pH6
-0.8
+0.2
N.D.
-0.5
+0.4
carbon source
acetate (C)
-0.1
+0.3
N.D.
+0.1
-0.6
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
-0.1
-0.6
N.D.
+0.2
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.0
N.D.
-0.7
+0.6
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
-0.5
N.D.
+0.3
+0.0
nitrogen source
L-Asparagine (N)
-0.2
-0.3
N.D.
+0.2
+0.4
pH
LB, pH6
-0.7
+0.5
N.D.
+0.1
+0.3
nitrogen source
Cytosine (N)
+0.3
-0.6
N.D.
+0.1
+0.5
stress
Cisplatin 0.0005 mg/ml
+0.2
-0.2
N.D.
+0.5
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.3
N.D.
+0.7
-0.1
stress
Paraquat dichloride 0.2 mg/ml
+0.3
-0.2
N.D.
+0.4
-0.1
stress
Paraquat dichloride 0.05 mg/ml
+0.3
+0.5
N.D.
+0.1
-0.4
carbon source
Glycerol (C)
+1.0
-0.2
N.D.
-0.0
-0.1
lb
LB
+0.0
+0.7
N.D.
-0.2
+0.1
carbon source
pipercolic (C)
-0.1
+0.5
N.D.
-0.1
+0.4
carbon source
L-Alanine (C)
-0.1
+1.3
N.D.
-0.3
-0.3
carbon source
L-Alanine (C)
-0.2
+0.8
N.D.
-0.2
+0.2
stress
A22 0.02 mg/ml
+0.7
+0.2
N.D.
-0.2
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.2
+0.3
N.D.
+0.5
-0.2
carbon source
Methyl beta-D-glucopyranoside (C)
-0.2
+0.3
N.D.
+0.4
+0.4
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.1
+0.5
N.D.
+0.3
+0.4
stress
Thallium(I) acetate 0.0025 mg/ml
+0.4
+0.6
N.D.
+0.1
+0.0
stress
copper (II) chloride 1 mM
+0.0
+0.7
N.D.
+0.4
+0.0
pH
LB, pH8
+0.9
+0.3
N.D.
-0.1
+0.3
pH
LB, pH8
+1.0
+0.4
N.D.
+0.0
+0.1
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