Fitness for 5 genes in Sinorhizobium meliloti 1021

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500 ntSMc02122 and SMc04436 are separated by 240 nucleotidesSMc04436 and SMc02121 are separated by 101 nucleotidesSMc02121 and SMc02120 are separated by 18 nucleotidesSMc02120 and SMc02119 are separated by 4 nucleotides SMc02122: SMc02122 - ferredoxin--NADP reductase, at 1,587,398 to 1,588,210 SMc02122 SMc04436: SMc04436 - hypothetical protein, at 1,588,451 to 1,588,729 SMc04436 SMc02121: SMc02121 - ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data), at 1,588,831 to 1,589,607 SMc02121 SMc02120: SMc02120 - ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, permease component 2 (from data), at 1,589,626 to 1,590,780 SMc02120 SMc02119: SMc02119 - ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, permease component 1 (from data), at 1,590,785 to 1,591,978 SMc02119
Group Condition SMc02122 SMc04436 SMc02121 SMc02120 SMc02119
carbon source L-Glutamine (C) N.D. +0.4 -1.9 -2.8 -2.9
carbon source L-Histidine (C) N.D. +0.1 -2.1 -2.5 -2.4
carbon source L-Alanine (C) N.D. +0.1 -3.4 -1.2 -1.5
carbon source L-Lysine (C) N.D. -0.0 -3.4 -0.5 -0.8
carbon source L-Lysine (C) N.D. +0.6 -3.4 -0.6 -0.8
carbon source L-Alanine (C) N.D. +0.4 -1.6 -1.3 -1.7
carbon source L-Lysine (C) N.D. +0.0 -2.7 -0.5 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.2 -3.0 +0.2 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.2 -3.1 +0.2 -0.2
carbon source L-Proline (C) N.D. +0.5 -1.4 -0.8 -0.9
carbon source pipercolic (C) N.D. -0.2 -1.3 -0.4 -0.4
pH LB, pH8 N.D. -0.6 -1.2 -0.0 -0.4
carbon source Methyl beta-D-glucopyranoside (C) N.D. -0.7 -0.9 -0.1 +0.1
stress Paraquat dichloride 0.2 mg/ml N.D. +0.0 -1.6 +0.1 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.1 -1.6 +0.1 -0.0
stress Polymyxin B sulfate 0.00005 mg/ml N.D. +0.2 -1.6 +0.1 -0.2
lb LB N.D. +0.1 -1.4 +0.1 -0.2
nitrogen source L-Asparagine (N) N.D. +0.2 -1.6 +0.4 +0.1
carbon source Protocatechuic Acid (C) N.D. +0.3 -1.3 +0.2 +0.0
volatiles R2A-HEPES with volatiles from Trichoderma atroviridae IMI N.D. +0.5 -1.1 +0.0 -0.2
carbon source 5-Aminovaleric (C) N.D. +0.8 -1.3 -0.1 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.5 -1.1 +0.2 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.2 +1.2 -0.1 -0.4
stress Sisomicin 0.004 mg/ml N.D. -0.3 +1.4 +0.1 -0.2
stress 6-Pentyl-2H-pyran-2-one 0.385649 mM N.D. +0.3 +1.2 -0.3 -0.1
volatiles R2A-HEPES with volatiles from Trichoderma atroviridae IMI N.D. +0.5 +1.0 -0.3 -0.1
stress copper (II) chloride 1 mM N.D. -0.4 +1.3 +0.2 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.7 +1.8 -0.6 -0.1
nitrogen source Cytosine (N) N.D. -0.3 +1.1 +0.6 +0.5
volatiles R2A-HEPES with volatiles from Trichoderma atroviridae IMI N.D. +0.5 +1.7 +0.1 -0.2
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