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Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc01980 and SMc01981 are separated by 200 nucleotides
SMc01981 and SMc01982 are separated by 137 nucleotides
SMc01982 and SMc01983 are separated by 33 nucleotides
SMc01983 and SMc01984 overlap by 4 nucleotides
SMc01980: SMc01980 - sugar transport system ATP-binding ABC transporter protein, at 2,704,614 to 2,705,681
SMc01980
SMc01981: SMc01981 - cytochrome C transmembrane protein, at 2,705,882 to 2,706,268
SMc01981
SMc01982: SMc01982 - alternative cytochrome C oxidase polypeptide II transmembrane protein, at 2,706,406 to 2,707,350
SMc01982
SMc01983: SMc01983 - alternative cytochrome C oxidase polypeptide I transmembrane protein, at 2,707,384 to 2,709,165
SMc01983
SMc01984: SMc01984 - cytochrome-C oxidase transmembrane protein, at 2,709,162 to 2,709,860
SMc01984
Group
Condition
SMc01980
SMc01981
SMc01982
SMc01983
SMc01984
stress
Cisplatin 0.001 mg/ml
-0.0
-0.8
+0.2
+0.1
-0.9
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.8
-0.3
+0.0
+0.0
-0.3
stress
Aluminum chloride
-0.7
-0.6
-0.1
+0.2
-0.1
temperature
LB, 23C
-0.1
-0.1
-0.0
-0.2
-0.8
stress
Chloride 200 mM
-0.2
-0.5
-0.0
-0.1
-0.3
pH
LB, pH7
-0.2
+0.1
-0.1
-0.1
-0.8
r2a control
R2A control for volatile experiments
-0.1
-1.0
-0.1
-0.1
+0.4
pH
LB, pH6
-0.3
+0.3
+0.0
-0.1
-0.8
lb
LB
+0.1
-0.2
+0.3
-0.1
-0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
-0.4
+0.2
+0.0
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.1
+0.0
+0.1
-1.0
carbon source
L-Leucine (C)
-0.1
+0.2
-0.1
+0.0
-0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
-0.7
-0.5
-0.1
+0.7
nitrogen source
Gelatin (N)
-0.2
-0.7
-0.1
+0.1
+0.4
pH
LB, pH6
+0.2
-0.4
+0.2
-0.1
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
-0.3
-0.5
+0.1
+0.2
nitrogen source
L-Arginine (N)
+0.2
-0.4
-0.4
+0.1
+0.5
nutrient
L-Histidine
+0.4
-0.4
-0.2
+0.1
+0.2
nitrogen source
L-Asparagine (N)
+0.3
-1.1
+0.0
+0.0
+0.8
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.3
+0.3
+0.1
-0.1
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.6
+0.2
+0.1
+0.4
nitrogen source
L-Leucine (N)
-0.0
+0.0
-0.5
+0.1
+0.8
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.4
-0.4
-0.1
+0.2
+0.5
nutrient
L-Lysine
+0.4
-0.6
-0.1
+0.1
+0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
+0.3
+0.1
+0.0
-0.3
stress
Chlorite 0.1 mM
-0.3
-0.2
+0.3
+0.2
+0.7
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
+0.3
-0.1
+0.2
-0.3
+0.6
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
+0.4
+0.3
-0.1
-0.1
+0.4
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.4
+0.4
+0.2
-0.3
+1.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
+0.1
-0.2
-0.0
+0.9
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