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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc01795 and SMc01796 are separated by 2 nucleotides
SMc01796 and SMc01797 are separated by 281 nucleotides
SMc01797 and SMc01798 are separated by 3 nucleotides
SMc01798 and SMc01799 are separated by 11 nucleotides
SMc01795: SMc01795 - polysaccharide transporter, at 1,341,498 to 1,343,636
SMc01795
SMc01796: SMc01796 - hypothetical protein, at 1,343,639 to 1,344,892
SMc01796
SMc01797: SMc01797 - acetyltransferase, at 1,345,174 to 1,345,824
SMc01797
SMc01798: SMc01798 - hypothetical protein, at 1,345,828 to 1,346,568
SMc01798
SMc01799: SMc01799 - signal peptide protein, at 1,346,580 to 1,346,768
SMc01799
Group
Condition
SMc01795
SMc01796
SMc01797
SMc01798
SMc01799
nitrogen source
L-Arginine (N)
-0.2
-0.0
-0.6
-1.0
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.1
-0.2
+0.1
-0.4
-1.2
stress
Nickel (II) chloride 1 mM
-0.0
-0.5
-0.5
-0.4
-0.2
stress
Cisplatin 0.0005 mg/ml
-0.3
-0.1
+0.1
-0.8
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.4
-0.7
+0.4
-0.4
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.0
-0.3
-0.6
-0.1
+0.2
nitrogen source
Gelatin (N)
-0.0
-0.3
-0.2
-0.6
+0.4
stress
Aluminum chloride
-0.4
-0.2
-0.2
-0.2
+0.3
pH
LB, pH8
-0.2
+0.2
+0.1
-0.2
-0.5
carbon source
Sucrose (C)
+0.2
+0.2
+0.0
-0.3
-0.5
stress
Cisplatin 0.001 mg/ml
+0.0
-0.3
+0.4
-0.4
-0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.5
-0.2
-0.2
+0.0
+0.7
nutrient
L-Histidine
+0.4
-0.2
-0.2
+0.2
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.0
-0.3
+0.6
-0.6
nitrogen source
L-Histidine (N)
+0.1
+0.2
-0.3
-0.4
+0.2
stress
Paraquat dichloride 0.3 mg/ml
+0.1
-0.3
+0.4
-0.1
-0.3
nitrogen source
Cytosine (N)
+0.1
-0.4
-0.1
+0.1
+0.4
carbon source
D-Xylose (C)
-0.1
+0.2
+0.2
+0.3
-0.5
stress
Paraquat dichloride 0.2 mg/ml
-0.1
-0.4
+0.0
-0.3
+0.8
stress
copper (II) chloride 1 mM
+0.1
+0.0
-0.0
-0.6
+0.8
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
-0.5
+0.0
+0.3
+0.4
nitrogen source
L-Serine (N)
+0.3
-0.3
-0.1
-0.1
+0.5
nutrient
Min media with glucose
-0.1
+0.4
-0.0
+0.5
-0.5
carbon source
Fumarate (C)
+0.2
+0.3
+0.2
-0.3
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.2
-0.2
-0.0
+0.4
+0.3
stress
3-octanone 2.655166667 mM
+0.1
+0.3
-0.4
+0.2
+0.5
dmso control
DMSO control
+0.2
-0.2
-0.2
+0.4
+0.6
carbon source
Xylobiose (C)
+0.1
+0.1
+0.4
+0.3
+0.4
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.0
+0.3
+0.4
+0.4
+0.3
carbon source
D-Mannose (C)
+0.2
+0.3
+0.4
+0.3
+0.4
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