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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc01793 and SMc01794 are separated by 5 nucleotides
SMc01794 and SMc01795 are separated by 209 nucleotides
SMc01795 and SMc01796 are separated by 2 nucleotides
SMc01796 and SMc01797 are separated by 281 nucleotides
SMc01793: SMc01793 - glycosyltransferase, at 1,339,538 to 1,340,707
SMc01793
SMc01794: SMc01794 - polysaccharide export system periplasmic transmembrane protein, at 1,340,713 to 1,341,288
SMc01794
SMc01795: SMc01795 - polysaccharide transporter, at 1,341,498 to 1,343,636
SMc01795
SMc01796: SMc01796 - hypothetical protein, at 1,343,639 to 1,344,892
SMc01796
SMc01797: SMc01797 - acetyltransferase, at 1,345,174 to 1,345,824
SMc01797
Group
Condition
SMc01793
SMc01794
SMc01795
SMc01796
SMc01797
stress
Nickel (II) chloride 1 mM
-0.2
+0.0
-0.0
-0.5
-0.5
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.0
+0.1
+0.0
-0.3
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+0.3
+0.2
-0.4
-0.7
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.2
+0.2
-0.5
-0.2
-0.2
stress
Aluminum chloride
+0.3
+0.1
-0.4
-0.2
-0.2
r2a control
R2A control for volatile experiments
-0.3
-0.1
+0.3
-0.1
-0.1
stress
3-octanone 2.655166667 mM
+0.0
-0.2
+0.1
+0.3
-0.4
stress
3-octanone 5.310333333 mM
+0.2
-0.2
+0.0
+0.2
-0.4
stress
perchlorate 10 mM
+0.0
+0.5
-0.2
-0.2
-0.2
stress
Paraquat dichloride 0.05 mg/ml
+0.1
+0.3
-0.1
-0.3
-0.1
nitrogen source
L-Asparagine (N)
+0.1
+0.4
-0.1
-0.2
-0.3
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
+0.4
-0.1
+0.1
-0.2
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
+0.3
-0.1
+0.5
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
+0.4
+0.1
-0.3
-0.2
nutrient
L-Histidine
+0.1
+0.2
+0.4
-0.2
-0.2
stress
Paraquat dichloride 0.3 mg/ml
-0.1
+0.1
+0.1
-0.3
+0.4
lb
LB
+0.2
+0.5
+0.0
-0.4
-0.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.1
+0.2
+0.3
-0.3
+0.2
stress
D-Cycloserine 0.05 mg/ml
+0.1
+0.6
-0.2
-0.3
+0.1
stress
Cisplatin 0.001 mg/ml
+0.3
-0.1
+0.0
-0.3
+0.4
nitrogen source
L-Leucine (N)
+0.0
+0.3
+0.2
-0.3
+0.2
stress
copper (II) chloride 1 mM
+0.2
+0.4
-0.1
+0.3
-0.3
pH
LB, pH8
-0.0
+0.5
-0.2
+0.2
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.6
+0.2
+0.0
-0.3
carbon source
D-Raffinose (C)
+0.3
+0.2
+0.2
-0.2
+0.2
stress
Chloride 200 mM
+0.1
+0.4
-0.0
+0.2
+0.2
carbon source
Lactitol (C)
+0.2
+0.0
+0.5
-0.1
+0.3
carbon source
Fumarate (C)
+0.1
+0.2
+0.2
+0.3
+0.2
carbon source
Glycerol (C)
+0.3
+0.3
+0.3
+0.1
+0.0
carbon source
D-Mannose (C)
+0.1
+0.1
+0.2
+0.3
+0.4
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